bioRxiv Science⌕ Search

Biology subjects

Tokita, M.

Publications and source records attributed to Tokita, M..

2 recordsLinked to original sources

Visual adaptation of opsin gene expression to the aquatic environment in sea turtles

Several vertebrate taxa, cetaceans, sirenia, pinnipeds, and sea snakes have adapted to the marine aquatic environment. In the species of these taxa, marine adaptation has resulted in shifts in the absorption spectra of opsin pigments and/or the degeneration or duplication of opsin genes. Thus, marine adaptation has strongly affected the evolution of opsins. In sea turtles, however, the effect of adaptation from freshwater to marine environments on opsin evolution has not been studied. In this study, we determined the high-throughput RNA sequences extracted from eyes of two sea turtles (green turtle: Chelonia mydas, loggerhead: Caretta caretta) and two freshwater turtle species (three-keeled pond turtle: Mauremys reevesii, softshell turtle: Pelodiscus sinensis) and investigated the amino acid evolution and expression of the opsin gene. We found that most of the sea turtle lineage-specific amino acid substitutions did not alter amino acid properties and did not include previously known substitutions for turning absorption spectra of opsin pigments, suggesting no adaptive amino acid substitutions in the opsins during marine adaptation in sea turtles. Instead, the blue-sensitive opsin (SWS2) gene expression was higher in sea turtles than in freshwater turtles. These results suggest that sea turtles may have adapted their vision to the blue light-rich marine environment by increasing SWS2 expression.

evolutionary biology↗

Sex identification in embryos and adults of Darwins finches

Darwins finches, endemic to the Galapagos and Cocos islands, are an iconic example of adaptive radiation and evolution under natural selection. Comparative genetic studies using embryos of Darwins finches have shed light on the possible evolutionary processes underlying the speciation of this clade. Molecular identification of the sex of embryonic samples is important for such studies, where this information often cannot be inferred otherwise. We tested a fast and simple chicken embryo protocol for extraction of genomic DNA on Darwins finch embryos. In addition, we suggest modifications to two of the previously reported PCR primer sets for CHD1, a gene used for sexing in adult passerine birds. The sex of all 29 tested embryos of six species of Darwins finches was determined successfully by PCR, using both primer sets. Hatchlings/nestlings and fledglings are also impossible to distinguish visually. This includes juveniles of sexually dimorphic species which are yet to moult in adult-like plumage and beak colouration. Furthermore, four species of Darwins finches are monomorphic, males and females looking alike. Therefore, sex assessment in the field can be a source of error, especially with respect to juveniles and mature monomorphic birds outside of the mating season. We caught 567 juveniles and adults belonging to six species of Darwins finches and only 44% had unambiguous sex-specific morphology. We sexed 363 birds by PCR, including individuals sexed based on marginal sex specific morphological traits (N=278) and birds which were impossible to classify in the field (N=39). For birds with marginal sex specific traits, PCR results revealed a 13% sexing error rate. This demonstrates that PCR based sexing can improve field studies on Darwins finches, especially when individuals with unclear sex-related morphology are involved. The protocols used here provide an easy and reliable way to sex Darwins finches throughout ontogeny, from embryos to adults.

molecular biology↗