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Tobias-Hunefeldt, S. P.

Publications and source records attributed to Tobias-Hunefeldt, S. P..

4 recordsLinked to original sources

Partitioning biota along the Elbe River estuary: where are the community transitions?

Estuarine zonation and community assemblages are frequently correlated with salinity, although the extent or nature of this correlation varies considerably among the published studies. While a smooth transition in biological communities is often conceptualized in association with estuarine fresh, brackish, and marine conditions, many studies have shown more distinct communities and the altogether absence of a brackish community. We explore these viewpoints in light of plant observations and soil and aquatic microbial analyses from permanent plots established on the Elbe River Estuary of northern Germany. Generally, two distinct communities were observed, a polyhaline assemblage towards the mouth of the system, and another that was associated with both the fresh and brackish mesohaline regimes further upriver. This was most pronounced among plant and soil bacteria communities, while aquatic 16S assemblages reflected little distinction at all. The proportion of marine classified taxa declined from the mouth to upriver and suggests that while the transition from marine to brackish or fresh vegetation falls within the sampled area, the same transition for microbial taxa could not be observed and may be further upriver. Thus, although we were able to identify two distinct communities, the "limit" of marine taxa was only evident for vegetation. While tidal and weather-related hydrology, as well as soil properties were also influential in distinguishing the communities, much of the variance remains unexplained. Further sampling, classification, and partitioning is necessary to determine the origin and/or autochthonous habitat, if any, for the Elbe River estuarine taxa. Geographic boundsbottom left: 53.556216{degrees}N, 8.824398{degrees}E top right: 53.917760 {degrees}N, 10.155669 {degrees}E

ecology↗

Predation impacts late but not early community assembly in model marine biofilms.

Bottom-up selection plays an important role in microbial community assembly but is unable to account for all observed variance. Other processes like top-down selection (e.g. predation) may be partially responsible for the unexplained variance. However, top-down processes often remain unexplored, especially in interaction with bottom-up selective pressures. We utilised an in situ marine biofilm model system to test the effects of bottom-up (i.e. substrate properties) and top-down (i.e. predator exclusion via 100 {micro}m mesh) selective pressures on community assembly over time (56 days). Community compositions were monitored using 16S and 18S rRNA amplicon sequencing. Wooden substrates promoted heterotrophic growth, while the inert substrates (i.e., plastic, glass, tile) lack of degradable material selected for autotrophs. Early wood communities contained 9-50% more mixotrophs and heterotrophs (e.g. Proteobacteria and Euglenozoa) compared to inert substrates. Inert substrates instead showed twice the autotrophic (e.g. Cyanobacteria and Ochrophyta) abundance. Late communities differed mainly due to exclusion status, as large predators preferably pruned heterotrophs. This resulted in the autotrophic domination of native communities, while high heterotrophic abundance characterised exclusive conditions. Top-down control through exclusion increased explainable variance by 18-53%, depending on community age, leading to increased understanding of the underlying ecological framework that guides microbial community assembly.

ecology↗

Metabolic profiling suggests two sources of organic matter shape microbial activity, but not community composition, in New Zealand fjords

Fjords are semi-enclosed marine systems with unique physical conditions that influence microbial communities structure. Pronounced organic matter and physical condition gradients within fjords provide a natural laboratory for the study of changes in microbial phylogeny and metabolic potential in response to environmental conditions (e.g. depth). In the open ocean new production from photosynthesis supplies organic matter to deeper aphotic layers, sustaining microbial activity. We measured the metabolic diversity and activity of microbial communities in fjords to determine patterns in metabolic potential across and within fjords, and whether these patterns could be explained by community composition modifications. We demonstrated that metabolic potential and activity are shaped by similar parameters as total (prokaryotic and eukaryotic) microbial communities. However, we identified increases in metabolic diversity and potential (but not in community composition) at near bottom (aphotic) sites consistent with the influence of sediments in deeper waters. Thus, while composition and function of the microbial community in the upper water column was likely shaped by marine snow and sinking POM generated by new production, deeper sites were strongly influenced by sediment resuspension of benthic organic matter generated from this or other sources (terrestrial, chemoautotrophic, microbial carbon loop), uncoupling the community composition and function dynamics.

ecology↗

Depth and location influence prokaryotic and eukaryotic microbial community structure in New Zealand fjords

Systems with strong horizontal and vertical gradients, such as fjords, are useful models for studying environmental forcing. Here we examine microbial (prokaryotic and eukaryotic) community changes associated with the surface low salinity layer (LSL) and underlying seawater in multiple fjords in Fiordland National Park (New Zealand). High rainfall (1200-8000 mm annually) and linked runoff from native forested catchments results in surface LSLs with high tannin concentrations within each fjord. These gradients are expected to drive changes in microbial communities. We used amplicon sequencing (16S and 18S) to assess the impact of these gradients on microbial communities and identified depth linked changes in diversity and community structure. With increasing depth we observed significant increases in Proteobacteria (15%) and SAR (37%), decreases in Opisthokonta (35%), and transiently increased Bacteroidetes (3% increase from 0 to 40 m, decreasing by 8% at 200 m). Community structure differences were observed along a transect from inner to outer regions, specifically 25% mean relative abundance decreases in Opisthokonta and Bacteroidetes, and increases in SAR (25%) and Proteobacteria (>5%) at the surface, indicating changes based on distance from the ocean. This provides the first in-depth view into the ecological drivers of microbial communities within New Zealand fjords.

ecology↗