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Thygesen, U. H.

Publications and source records attributed to Thygesen, U. H..

2 recordsLinked to original sources

Optimal seasonal routines across animals and latitudes

Most animals face seasonal fluctuations in food availability and need to develop an annual routine that maximizes their lifetime reproductive success. Two particularly common strategies are reducing energy expenditure and building storage to sustain the animal in meager periods (winters). Here, we pose a simple and generic model for an animal that can decide, at each time during the season, on its level of foraging effort and on building energy stores. Using dynamic optimization, we identify the optimal annual routines that maximize the trade-off between energy and mortality over a life-long horizon. We investigate how the optimal strategies depend on the body size and longevity of the animal, and upon the seasonal variability in the environment. We find that with large fluctuations, the optimal annual routine for small animals is to develop a surviving egg/spore stage rather than to attempt to survive the winter. Medium sized animals invest heavily in reserves to allow long hibernation, while larger animals only need smaller reserves and a shorter hibernation period. In environments with smaller fluctuations, organisms do not need energy stores or hibernation but reduce foraging activities during spring and summer where their fitness is highest. Our optimization model can be used as a null hypothesis to explain the annual routines of animals of all body sizes across the globe.

ecology↗

Opening the black box of fish tracking using acoustic telemetry

The R package yaps was introduced in 2017 as a transparent open source alternative to closed source manufacturer-provided solutions to estimate positions of fish (and other aquatic animals) tagged with acoustic transmitters. Although yaps is open source and transparent, the process from raw detections to final tracks has proved to be challenging for many potential users, effectively preventing most users from accessing the benefits of using yaps. Especially, the very important process of synchronizing the hydrophone arrays have proven to be an obstacle for many potential users. To make yaps more approachable to the wider fish tracking community, we have developed and added user-friendly functions assisting users in the complex process of synchronizing the data. Here, we introduce these functions and a six-step protocol intended to provide users with an example workflow that can be used as a template enabling users to apply yaps to their own data. Using example data collected by an array of Vemco VR2 hydrophones, the protocol walks the user through the entire process from raw data to final tracks. Example data sets and complete code for reproducing results are provided.

animal behavior and cognition↗