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Thrasher, D. J.

Publications and source records attributed to Thrasher, D. J..

2 recordsLinked to original sources

Plural breeding among unrelated females and other insights on complex social structure in the cooperatively breeding Variegated Fairywren

Cooperatively breeding species vary widely in degree of social complexity, and disentangling relationships among group members can reveal the costs and benefits of cooperation. Here, we explore the social system of a relatively unstudied cooperatively breeding bird, the Variegated Fairywren (Malurus lamberti), and explore how social complexity and group dynamics may affect cooperation and conflict. We used a combination of field-based population monitoring and detailed social association observations to determine group membership annually across four breeding seasons (2014 - 2017), and used a ddRAD-seq genotyping method to determine genetic relationships within social groups. Social groups ranged in size from 2 - 8 individuals and nearly half of all social groups had multiple adult individuals of both sexes. Approximately two-thirds of those groups exhibited plural breeding, in which multiple females within the same social group nested individually on the same territory. Genetic relationships were diverse across social groups, and many consisted of a combination of relatives and non-relatives of each sex. Notably, although related females often were present within a social group, co-breeding females in the same social group were never closely related to each other. Given extensive variation in relatedness among group members, cooperation in the Variegated Fairywren is likely maintained by a combination of direct and indirect fitness benefits.

ecology↗

Double-digest RAD sequencing outperforms microsatellite loci at assigning paternity and estimating relatedness: a proof of concept in a highly promiscuous bird

Information on genetic relationships among individuals is essential to many studies of the behavior and ecology of wild organisms. Parentage and relatedness assays based on large numbers of SNP loci hold substantial advantages over the microsatellite markers traditionally used for these purposes. We present a double-digest restriction site-associated DNA sequencing (ddRAD-seq) analysis pipeline that, as such, simultaneously achieves the SNP discovery and genotyping steps and which is optimized to return a statistically powerful set of SNP markers (typically 150-600 after stringent filtering) from large numbers of individuals (up to 240 per run). We explore the tradeoffs inherent in this approach through a set of experiments in a species with a complex social system, the variegated fairy-wren (Malurus lamberti), and further validate it in a phylogenetically broad set of other bird species. Through direct comparisons with a parallel dataset from a robust panel of highly variable microsatellite markers, we show that this ddRAD-seq approach results in substantially improved power to discriminate among potential relatives and considerably more precise estimates of relatedness coefficients. The pipeline is designed to be universally applicable to all bird species (and with minor modifications to many other taxa), to be cost- and time-efficient, and to be replicable across independent runs such that genotype data from different study periods can be combined and analyzed as field samples are accumulated.

animal behavior and cognition↗