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Thompson, J. B.

Publications and source records attributed to Thompson, J. B..

6 recordsLinked to original sources

Ethnopharmacological disease classification and bioprospecting: the diversity of plant drugs used to treat cancer

Cancer is a highly-diverse disease and as the second-leading cause of death worldwide is a focus of drug discovery research. Natural products have been shown to be a useful source of novel molecules for the treatment of cancer. It is likely there are many plants with undiscovered molecules of therapeutic value, however identifying new leads from among the vast diversity of plants is very challenging. Traditional knowledge might inform bioprospecting by predicting lineages of plants rich in therapeutically useful molecules. Here, we characterise the phylogenetic diversity of plants used traditionally to manage cancer. We demonstrate the independent and repeated targeting of specific lineages of plants by different peoples in different parts of the world. That the same lineages are used to treat different cancers is suggestive of independent discovery of therapeutic value. However, the lineages we report here as rich in plants used traditionally to treat cancer coincide with those for other ethnobotanical applications, and contain few plants with proven anti-cancer activity. It is likely that the traditional knowledge recorded and explored here is shaped by selection of plants conferring milder effects for treating wider symptoms, such as tiredness or nausea, rather than for halting tumour growth. Accurate prediction of useful plant lineages for cancer management requires more nuanced information than is commonly provided in ethnobotanical records.

evolutionary biology↗

Did succulents diversify in response to aridity? Evolutionary analyses of major succulent lineages around the world

The succulent syndrome is one of the most iconic life strategies in angiosperms, maximising water storage through a suite of adaptations to water-scarcity. Though succulence is considered a classic case of convergent evolution driven by shared environmental drivers, we lack a full understanding of whether the timing and drivers of the diversification of succulent lineages are, in fact, concordant. Here we analyse time-calibrated phylogenetic reconstructions of the seven richest lineages of succulents, and study diversification dynamics in relation to abiotic variables. Our analyses reveal different levels of synchronicity and relation with aridity. The impact of atmospheric CO2 on succulent macroevolution is varied. While transitions and radiations are especially concentrated in recent time, following a collapse of atmospheric CO2 [~]15 million years ago, CO2-dependent diversification is not supported in most lineages. With the exception of Euphorbia, we find that succulence elevates net diversification, though the effects on underlying speciation and extinction disagree. The phylogenetic distribution of transitions to succulence and rate shift increases suggest these phenomena are decoupled, indicating that succulence might not adhere to a classic key innovation model. We discuss that these evolutionary patterns reveal the ecological complexity of the succulent strategy, beyond simplistic interpretations as adaptations towards aridity.

plant biology↗

Identifying the multiple drivers of Cactus diversification

Many drivers of diversification have been identified across the angiosperm Tree of Life, ranging from abiotic factors, such as climate change, to biotic factors such as key adaptations. While this provides invaluable evolutionary insight into the rise of major angiosperm lineages, our understanding of the complexity underlying this remains incomplete. In species-rich families such as Cactaceae, simple explanations of triggers of diversification are insufficient. Their sheer morphological and ecological diversity, and wide distribution across heterogeneous environments, render the identification of key forces difficult. Cactus diversification is likely shaped by multiple drivers, which themselves interact in complex ways. This complexity is extremely difficult to disentangle, but applying modern analytical methods to extensive datasets offers a solution. Here, we investigate the heterogeneous diversification of the iconic Cactus family. We reconstruct a comprehensive phylogeny, build a dataset of 39 abiotic and biotic variables, and predict the variables of central importance to tip-speciation rate variation using Machine Learning. State-dependent diversification models confirm that a rich range of eleven abiotic and biotic variables filtered as important by Machine Learning shape Cactus diversification. Of highest importance is an atypical latitudinal gradient in speciation rates, which is spatially decoupled from richness hotspots. Of medium importance is plant size, shaped by growth form. Of lesser, but significant, importance is soil composition, bioclimate, topography, geographic range size, and chromosome count. However, it is unlikely that any one of these eleven variables is of primary importance without the complex interactions formed with others. Our results contribute to our understanding of one of the most iconic angiosperm families, while revealing the need to account for the complexity underlying macroevolution.

evolutionary biology↗

No evidence for angiosperm mass extinction at the Cretaceous-Paleogene (K-Pg) boundary

The Cretaceous-Paleogene mass extinction event (K-Pg) witnessed up to 75% of animal species going extinct, most notably among these are the non-avian dinosaurs. A major question in macroevolution is whether this extinction event influenced the rise of flowering plants (angiosperms). The fossil record suggests that the K-Pg event had a minor impact on the extinction rates of angiosperm lineages, yet the diversification of extant angiosperms was delayed and started after the K-Pg boundary. However, phylogenetic evidence for angiosperm extinction dynamics remains unexplored. Through the analyses of two angiosperm mega-phylogenies containing ~32,000-74,000 extant species, here we show relatively constant extinction rates throughout geological time and no evidence for a mass extinction at the K-Pg boundary. Despite uncertainty of earliest angiosperm branching times, their staggering diversity, and complex evolutionary dynamics, our preliminary analyses provide congruent results with the fossil record and support the macroevolutionary resilience of angiosperms to the K-Pg mass extinction.

evolutionary biology↗

Phylogenetic reconstructions of Polynesian medicinal plant use reveal adaptive strategies to meet health needs

Modern migrants using plants to meet their health needs are known to conserve traditional knowledge, but also to innovate to adapt to their new environment. The voyage into Polynesia is amongst the most remarkable of human migrations, resulting in the peopling of isolated, difficult to reach archipelagos. We use this context to determine the role for adaptation in plant-based healthcare at pre-historic timescales. Testing the extent to which the new floristic environments encountered, cultural ancestry or geographic proximity predict the composition of ethnopharmacopoeias, we reveal adaptation to new floristic environments across seven oceanic ethnolinguistic groups. Reconstructions using data that encompass therapeutic applications and plant parts reveal more than three quarters of the plants used cross-culturally have use likely to be innovations by the first migrants into Oceania. For the other plants, there are non-tree-like patterns in therapeutic applications and plant parts used, showing that even when plants have continuity of use there is lability in how they are used. Applying linguistic criteria to the plants with putatively deep cultural uses, we find two, qaoa (Ficus) and walo-walo (Premna), that are highly conserved in therapeutic use, plant part used and with cognate names. Our study highlights the remarkable flexibility of Polynesian people seeking to meet health needs.

evolutionary biology↗

Speciation across the Earth driven by global cooling in orchidoid orchids

Though climate change has been implicated as a major catalyst of diversification, its effects are thought to be inconsistent and much less pervasive than localised climate or the accumulation of species with time. But, we need focused analyses of highly specious clades to disentangle the consequences of climate change, geography and time. Here, we show that global cooling shapes the biodiversity of terrestrial orchids. Employing a phylogenetic framework of 1,450 species of Orchidoideae, the largest terrestrial orchid subfamily, we find that speciation rate is causally linked with historic global cooling, not time, habitation in the tropics, altitude, variation in chromosome number, or other types of historic climate change. Relative to the gradual accumulation of species with time, models specifying speciation driven by historic global cooling are 328 times more likely. Evidence ratios estimated for 212 other plant and animal groups reveal that the orchidoids represent one of the best-supported cases of temperature-spurred speciation yet reported. Employing >1.4 M georeferenced records, we find that global cooling drove contemporaneous diversification in each of the seven major orchid bioregions of the earth. With current emphasis on understanding and predicting the immediate impacts of global warming, our study provides a clear case study of the longterm impacts of global climate change on biodiversity. Significance statementThe staggering biodiversity of angiosperms has been difficult to reconcile with the gradual Darwinian process thought to create it. Changes in climate through the Earths history could have instigated this diversification, but perceived variability across clades and geography has restrained generalisation. In this paper, we reconstruct the evolutionary history of a rich terrestrial orchid subfamily favoured by Darwin (Orchidoideae, ~5,000 species), and use >1.4 million georeferenced records to test how and where those orchid species arose. We find that global cooling between the Oligocene and present day spurred an avalanche of speciation in orchidoid assemblages across the Earth. This work resolves the orchidoid phylogeny and provides a clear example of how historic climate change drives global patterns of biodiversity.

evolutionary biology↗