Biology subjects

Thiele, T. R.

Publications and source records attributed to Thiele, T. R..

6 recordsLinked to original sources

bioRxiv2026

Relaxin-3 neurons of the zebrafish periaqueductal gray mediate behavioral responses evoked by darkness

Ambient illumination influences many aspects of brain function, including responses to threats. One brain region proposed to mediate these effects is the periaqueductal gray (PAG), an evolutionarily conserved midbrain structure that contains multiple subpopulations of peptidergic neurons. Here we ask which cell types in the larval zebrafish PAG respond to changes in ambient illumination. By registering post hoc gene expression to neurons recorded during exposure to sensory stimuli, we show that GABAergic PAG neurons expressing the neuropeptide Relaxin-3 (rln3a+) are persistently activated by darkness, while a neighboring subpopulation of GABAergic PAG neurons expressing penka is not. Zebrafish lacking rln3a show a reduction in locomotion during darkness. We propose that darkness recruits Relaxin-3-releasing PAG neurons to promote vigilance and potentiate defense circuits. These results identify a specific peptidergic population of PAG neurons that are potentially relevant to behavioral state dysregulation associated with excessive darkness.

neuroscience↗

bioRxiv2026

MARINER: a surround visual stimulator for vision research in aquatic animals

Aquatic vertebrates are increasingly used in neuroscience research, yet underwater visual stimulation remains a challenge. Commonly used monochromatic stimuli have been shown to be inadequate to activate many visual neurons properly, and underwater refraction artifacts are prone to ruin stimulus designs. Here, we present MARINER - a visual stimulator, which remedies these issues and integrates concurrent behavioral and neurophysiological two-photon calcium imaging recordings. MARINERs full-field visual stimulation combined with receptive field mapping reveals that the visual field of larval zebrafish is larger than previously thought, extending almost down below the fish, and is spatially biased to better utilize motion content in naturalistic visual scenes. Using chromatic motion nulling, we further show that behavioral responses and task-associated sensory neurons are colorblind for "red" and "green" during the larvas optokinetic response. The MARINER stimulator facilitates naturalistic stimulation and faithful presentation of colored visual underwater stimuli for small aquatic species.

neuroscience↗

bioRxiv2025

Head stabilization behavior and underlying circuit mechanisms in larval zebrafish

Head stabilization is essential for animal survival, enabling stable sensory input and effective motor coordination. Animals stabilize their heads in response to vestibular stimuli through the vestibulo-collic reflex (VCR). While the VCR has been characterized in tetrapod vertebrates, it remains unknown whether fish, which lack an anatomical neck, employ a comparable behavior. Here, we demonstrate that larval zebrafish exhibit VCR-like behaviors: they adjust their head orientation relative to the body by rostral body flexion during pitch tilts. The rostral body flexed ventrally during head-up posture, whereas it flexed dorsally during head-down posture. These flexions partially compensated for the head pitch changes, thereby contributing to head stabilization. We also identified the muscles and neural circuits responsible for these two types of body flexions. Both the dorsal and ventral flexions were mediated by the same vestibular nucleus, but neural signals were transmitted through distinct pathways, either involving or bypassing a class of reticulospinal neurons. The dorsal and ventral flexions were ultimately produced by specialized dorsal and ventral muscles in the rostral body, respectively. The neural circuits underlying these body flexions in fish share similarities with those underlying the mammalian VCR. Together, our results demonstrate that fish exhibit a VCR-like behavior through comparable circuit mechanisms, suggesting that the VCR is evolutionarily conserved across vertebrates.

neuroscience↗

bioRxiv2021

Identification of Subpallial Neuronal Populations Across Zebrafish Larval Stages that Express Molecular Markers for the Striatum

Striatal neurons play a central role in vertebrate action selection; however, their location in larval zebrafish is not well defined. We assayed for conserved striatal markers in the zebrafish subpallium using fluorescent in situ hybridization (FISH) and immunohistochemistry. Whole mount FISH revealed an inhibitory neuronal cluster rostral to the anterior commissure that expresses tac1, a gene encoding substance P. This molecular profile is shared by mammalian striatal direct pathway neurons. A second partially overlapping population of inhibitory neurons was identified that expresses penka, a gene encoding enkephalin. This molecular profile is shared by striatal indirect pathway neurons. Immunostaining for substance P and enkephalin confirmed the presence of these peptides in the subpallium. The tac1 and penka populations were both found to increase linearly across larval stages. Together, these findings support the existence of a striatal homologue in larval zebrafish that grows to match the development and increasing behavioural complexity of the organism.

neuroscience↗

bioRxiv2021

BonZeb: Open-source, modular software tools for high-resolution zebrafish tracking and analysis

We present BonZeb - a suite of modular Bonsai packages which allow high-resolution zebrafish tracking with dynamic visual feedback. Bonsai is an increasingly popular software platform that is accelerating the standardization of experimental protocols within the neurosciences due to its speed, flexibility, and minimal programming overhead. BonZeb can be implemented into novel and existing Bonsai workflows for online behavioral tracking and offline tracking with batch processing. We demonstrate that BonZeb can run a variety of experimental configurations used for gaining insights into the neural mechanisms of zebrafish behavior. BonZeb supports head-fixed closed-loop and free-swimming virtual open-loop assays as well as multi-animal tracking, optogenetic stimulation, and calcium imaging during behavior. The combined performance, ease of use and versatility of BonZeb opens new experimental avenues for researchers seeking high-resolution behavioral tracking of larval zebrafish.

neuroscience↗

bioRxiv2019

Parallel channels for motion feature extraction in the pretectum and tectum of larval zebrafish

Non-cortical visual areas in vertebrate brains extract different stimulus features, such as motion, object size and location, to support behavioural tasks. The optic tectum and pretectum, two primary visual areas, are thought to fulfil complementary biological functions in zebrafish to support prey capture and optomotor stabilisation behaviour. However, the adaptations of these brain areas to behaviourally relevant stimulus statistics are unknown. Here, we used calcium imaging to characterize the receptive fields of 1,926 motion-sensitive neurons in diencephalon and midbrain. We show that many caudal pretectal neurons have large receptive fields (RFs), whereas RFs of tectal neurons are smaller and mostly size-selective. RF centres of large-size RF neurons in the pretectum are predominantly located in the lower visual field, while tectal neurons sample the upper-nasal visual field more densely. This tectal visual field sampling matches the expected prey item locations, suggesting that the tectal magnification of the upper-nasal visual field might be an adaptation to hunting behaviour. Finally, we probed optomotor responsiveness and found that even relatively small stimuli drive optomotor swimming, if presented in the lower-temporal visual field, suggesting that the pretectum preferably samples information from this region on the ground to inform optomotor behaviour. Our characterization of the parallel processing channels for non-cortical motion feature extraction provides a basis for further investigation into the sensorimotor transformations of the zebrafish brain and its adaptations to habitat and lifestyle.

neuroscience↗