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Telhan, O.

Publications and source records attributed to Telhan, O..

2 recordsLinked to original sources

Morphologically Tunable Mycelium Chips for Physical Reservoir Computing

AO_SCPLOWBSTRACTC_SCPLOWWe introduce a neuromorphic computing substrate based on PEDOT:PSS-infused mycelium, a biofabricated, morphologically tunable material that can be engineered into electrically active components including resistors, capacitors, and non-linear elements. Leveraging the principles of physical reservoir computing, we demonstrate that hyphal networks grown under controlled environmental conditions can transform time-varying inputs into nonlinear, high-dimensional state trajectories, enabling machine learning tasks such as NARMA-10 sequence prediction. The chips are produced using a "design-grow-compute" workflow that integrates morphological modeling, parametric growth protocols, and vacuum-assisted polymer infusion. Morphological complexity is shown to influence charge transport and memory capacity, offering a new axis of control for designing analog computational architectures. Our prototype chips interface with a custom carrier board enabling analog signal conditioning and readout. Benchmarking revealed robust nonlinearity, temporal dynamics, and task-relevant separability. Unlike memristor arrays, photonic, or living-cell-based reservoir systems, our non-living analog mycelium chip is low-cost, biodegradable, and scalable using existing mushroom farming infrastructure, with production yields exceeding 3 million chips per growth cycle. This proof-of-concept demonstration using a single prototype device establishes the first biodegradable reservoir computing platform, with performance trade-offs justified by unprecedented sustainability advantages and orders-of-magnitude cost reductions. This advances a novel direction for biologically derived, single-use (compostable) or very large-scale machine learning hardware and introduces mycelium as a functional medium for analog inference.

bioengineering↗

Advanced understanding of prokaryotic biofilm formation using a cost-effective and versatile multi-panel adhesion (mPAD) mount

Most microorganisms exist in biofilms, which comprise aggregates of cells surrounded by an extracellular matrix that provides protection from external stresses. Based on the conditions under which they form, biofilm structures vary in significant ways. For instance, biofilms that develop when microbes are incubated under static conditions differ from those formed when microbes encounter the shear forces of a flowing liquid. Moreover, biofilms develop dynamically over time. Here, we describe a cost-effective, 3D-printed coverslip holder that facilitates surface adhesion assays under a broad range of standing and shaking culture conditions. This multi-panel adhesion (mPAD) mount further allows cultures to be sampled at multiple time points, ensuring consistency and comparability between samples and enabling analyses of the dynamics of biofilm formation. As a proof of principle, using the mPAD mount for shaking, oxic cultures, we confirm previous flow chamber experiments showing that Pseudomonas aeruginosa wild type and a phenazine deletion mutant ({Delta}phz) form similar biofilms. Extending this analysis to anoxic conditions, we reveal that microcolony and biofilm formation can only be observed under shaking conditions and are decreased in the {Delta}phz mutant compared to wild-type cultures, indicating that phenazines are crucial for the formation of biofilms if oxygen as an electron acceptor is not available. Furthermore, while the model archaeon Haloferax volcanii does not require archaella for attachment to surfaces under static conditions, we demonstrate that H. volcanii mutants that lack archaella are negatively affected in their early stages of biofilm formation under shaking conditions. ImportanceDue to the versatility of the mPAD mount, we anticipate that it will aid the analysis of biofilm formation in a broad range of bacteria and archaea. Thereby, it contributes to answering critical biological questions about the regulatory and structural components of biofilm formation and understanding this process in a wide array of environmental, biotechnological, and medical contexts.

microbiology↗