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Teixeira, J. A.

Publications and source records attributed to Teixeira, J. A..

2 recordsLinked to original sources

Prioritizing Neglected Food Species in Nutritional Studies Using Expert-Knowledge and Explainable AI

Food biodiversity is vital for human health and sustainable food systems. However, research on neglected and underutilized species is limited by funding, uneven research capacity, and the challenge of balancing ecological, cultural, and public health considerations, requiring innovative prioritization approaches. Using Brazil as a model, this study inventories 369 neglected food species across algae, aquatic fauna, wild terrestrial vertebrates, insects, mushrooms, and plants. A mixed-methods approach, combining expert knowledge and explainable AI (LightGBM and SHAP value analysis), identified key factors for prioritizing species for food composition and consumption studies. The inventory is dominated by plants (29.5%) and wild vertebrates (24.4%), with major nutritional data gaps, particularly for algae, insects, and wild vertebrates. Over 36,000 recipes using neglected species were identified. In both food composition (R{superscript 2}: 0.677) and consumption studies (R{superscript 2}: 0.782) recipe number and species occurrence across different states were the most influential features predicting prioritization. These findings emphasize the role of cultural uses and local accessibility in shaping nutritional research priorities. We urge increased research on neglected species to bridge data gaps and integrate them into food systems, promoting sustainable diets in Brazil and other tropical regions.

ecology↗

Differential proteomic analysis by SWATH-MS unravels the most dominant mechanisms underlying yeast adaptation to non-optimal temperatures under anaerobic conditions

Elucidation of temperature tolerance mechanisms in yeast is essential for enhancing cellular robustness of strains, providing more economically and sustainable processes. We investigated the differential responses of three distinct Saccharomyces cerevisiae strains, an industrial wine strain, ADY5, a laboratory strain, CEN.PK113-7D and an industrial bioethanol strain, Ethanol Red, grown at sub- and supra-optimal temperatures under chemostat conditions. We employed anaerobic conditions, mimicking the industrial processes. The proteomic profile of these strains was performed by SWATH-MS, allowing the quantification of 997 proteins, data available via ProteomeXchange (PXD016567). Our analysis demonstrated that temperature responses differ between the strains; however, we also found some common responsive proteins, revealing that the response to temperature involves general stress and specific mechanisms. Overall, sub-optimal temperature conditions involved a higher remodeling of the proteome. The proteomic data evidenced that the cold response involves strong repression of translation-related proteins as well as induction of amino acid metabolism, together with components related to protein folding and degradation while, the high temperature response mainly recruits amino acid metabolism. Our study provides a global and thorough insight into how growth temperature affects the yeast proteome, which can be a step forward in the comprehension and improvement of yeast thermotolerance.

microbiology↗