Biology subjects

Tanaka, H.

Publications and source records attributed to Tanaka, H..

At least 37 records · Page 2Linked to original sources

bioRxiv2025

Mycn Reactivates the Cell Cycle in Adult Cardiomyocytes and Promotes Cardioprotection in Myocardial Infarction

BackgroundAdult mammalian cardiomyocytes are terminally differentiated and possess minimal capacity for cell cycle re-entry. However, recent studies have shown that a rare population of cycling cardiomyocytes may confer cardioprotective effects following myocardial infarction (MI). The Myc family--Myc, Mycl, and Mycn--plays central roles in regulating cell cycle progression and cellular plasticity. This raises the possibility that specific Myc isoforms could reactivate the cardiomyocyte cell cycle and promote cardioprotective responses in the ischemic heart. This study aimed to systematically evaluate the effects of Myc, Mycl, and Mycn on cardiomyocyte cell cycle activation and cardiac outcomes following MI. MethodsCardiomyocyte-specific overexpression of Myc, Mycl, or Mycn was achieved in adult mice via adeno-associated virus 9 vectors driven by the cardiac troponin T promoter. Cardiomyocyte cell cycle activity, structural remodeling, and functional outcomes were assessed using RNA sequencing, immunohistochemistry, and transthoracic echocardiography. Cardioprotective effects were evaluated in MI model mice. ResultsWhile all three Myc family members activated cell cycle-related gene expression to varying degrees, Mycn elicited the most robust response. Mycn overexpression significantly enhanced cardiomyocyte cell cycle re-entry, as demonstrated by increased 5-bromo-2-deoxyuridine incorporation and phosphorylation of histone H3. Mycn also induced hypertrophic growth, reflected by increased cardiomyocyte size and heart mass. Transcriptomic analyses revealed that Mycn uniquely upregulated genes associated with extracellular matrix remodeling and paracrine signaling, typically enriched in neonatal cardiomyocytes and previously linked to cardioprotection. Functionally, Mycn expression preserved cardiac contractility after MI, reduced infarct size, and increased capillary density in peri-infarct regions. ConclusionsThese findings identify Mycn as a functionally distinct member of the Myc family in the adult heart, capable of reactivating the cardiomyocyte cell cycle and promoting cardiac protection after ischemic injury. The cardioprotective effects appear to be mediated, in part, by the induction of a neonatal-like gene expression program supporting a stress-adaptive cardiac microenvironment.

molecular biology↗

bioRxiv2025

Rhizobial infection-specific accumulation ofphosphatidylinositol 4,5-bisphosphate inhibits the excessive infection of rhizobia in Lotus japonicus

O_LIDuring the symbiosis of legume with nitrogen-fixing bacteria, collectively called rhizobia, suppression of excessive rhizobial infection by host plants is important to maximize the benefits of symbiotic nitrogen fixation. However, it remains relatively poorly understood the molecular mechanism involved in the suppression. C_LIO_LIWe performed LC-MS and RNA-seq analysis using rhizobia-infected Lotus japonicus roots and investigated the role of phosphatidylinositol (PI) and phosphatidylinositol phosphates (PIPs) in the symbiosis. Phosphatidylinositol transfer protein (PITP)-like proteins 4 (PLP4), phosphatidylinositol 3-phosphate 5-kinase 4 (PIP5K4) and PIP5K6 mutants, which are involved in the vesicular transport of lipids and phosphorylation of PIPs, were used to show the involvement of the signaling of PI and PIPs. Accumulation of phosphatidylinositol 4,5-bisphosphate [PI(4,5)P2] during rhizobial infection were examined by a fluorescent marker 1xTUBBY-C (TUBBY). C_LIO_LIWe found that PI signaling-related genes were upregulated, and the amount of PIP2 increased in L. japonicus roots during rhizobial infection. In the PLP4, PIP5K4 and PIP5K6 mutants, rhizobial infection increased and PIP2 accumulation was failed. Furthermore, the observation of PI(4,5)P2 in rhizobia-infected roots revealed that the ectopic accumulation was closely related to suppression of rhizobial infection. C_LIO_LIOur findings indicate that the accumulation of PI(4,5)P2, which is mediated by PLP and PIP5Ks, suppresses excessive rhizobial infection in the root epidermis and cortex, leading to the optimal number of nodules. C_LI

plant biology↗

bioRxiv2025

Noninvasive reconstruction of complete mitochondrial genomes from aquatic environmental DNA using PCR-free long-read sequencing

O_LIEnvironmental DNA (eDNA) is a powerful, noninvasive data source for assessing aquatic biodiversity, but the assumption that it is present only in low concentrations and highly fragmented forms has limited its use. Accordingly, eDNA genomic analyses have focused on short mitochondrial regions, which often lack the resolution for accurate species identification or individual-level analysis. However, some intact mitochondrial genomes may persist in aquatic environments, and their recovery could enable noninvasive determination of complete mitochondrial sequences, providing higher-resolution genetic information. Nevertheless, most eDNA studies have overlooked long-read DNA analysis, and current protocols are not optimised to detect or utilise these longer fragments. C_LIO_LITo address this, we developed a long-read sequencing workflow to reconstruct complete mitochondrial genomes from eDNA. First, we selected the optimal DNA extraction method and filter pore sizes using water from aquaria containing Carassius auratus or Oryzias latipes, aiming to maximise the yield of high-molecular-weight DNA for target organism sequences. We then applied two sequencing strategies: a PCR-free approach using native eDNA and a long-range PCR-based approach targeting the complete mitochondrial genome. C_LIO_LIUsing the determined DNA extraction method and a filter (1.2 {micro}m pore size), we obtained high-molecular-weight DNA suitable for long-read sequencing. In the PCR-free approach, C. auratus samples from single-fish aquaria yielded hundreds of reads mapped to the mitochondrial genome, with some reads exceeding 16,000 bp. These allowed de novo assembly of full-length mitochondrial genomes in several samples. In the PCR-based approach, one sample yielded over 100,000 mitochondrial reads, of which >27% exceeded 16,000 bp, enabling assemblies. Comparison with assemblies from tissue-derived DNA confirmed accuracy, as sequences were nearly identical. Across samples, polymorphism analysis revealed two distinct haplotypes in C. auratus. These results demonstrate that full-length mitochondrial genomes can be reconstructed from eDNA, and that both PCR-free and PCR-based strategies are effective under appropriate sample conditions. C_LIO_LIOur results show that long-read sequencing enables the recovery of near-complete mitochondrial genomes directly from eDNA without requiring artificial fragmentation and, in some cases, without the need for enrichment steps. This approach enhances eDNA-based biodiversity monitoring by improving species identification and enabling within-population level analyses. C_LI

ecology↗

bioRxiv2025

Aβ-HMGB1 complex is a pathogenic molecule at the advanced stage of Alzheimer's disease

Multiple molecules including A{beta}, tau and other inflammatory molecules mediate Alzheimers disease (AD) pathology. High mobility group box 1 (HMGB1), which is released from necrotic cells and binds to Toll-like receptors (TLRs) of surrounding neurons and microglia, also mediates AD pathology from the early stage. Paradoxically, HMGB1 concentration in cerebrospinal fluid (CSF) at the advanced stage of AD is not higher than that at the early stage. Here we show that A{beta}-HMGB1 complexes are generated in neurons undergoing secondary necrosis around A{beta} plaques in the AD brain at the advanced stage. A{beta}-HMGB1 complex triggers neurite degeneration and necrosis of human normal iPSC-derived neurons via binding to TLR4. Further, two anti-HMGB1 antibodies that inhibit its interaction with TLR4 successfully suppress the toxicity of A{beta}-HMGB1 complex to human iPSC-derived neurons, and recover cognitive impairment and A{beta}-HMGB1 complex-related brain pathology in AD model mice, while such therapeutic effects were not obvious with an anti-A{beta} antibody (lecanemab) approved for human AD patients. Enzyme-Linked Immuno Sorbent Assay (ELISA) revealed plasma level of A{beta}-HMGB1 complex was increased in a part of AD patients at the advanced stage. These findings for the molecular basis of toxicity to neurons suggest the significance of A{beta}-HMGB1 complex at the advanced stage of AD pathology, and might explain the discrepancy between A{beta} burdens and clinical symptoms of human AD patients treated with anti-A{beta} antibody.

neuroscience↗

bioRxiv2025

PQBP1-dependent alternative RNA splicing underlies high calorie diet-induced cognitive impairment

High calorie-high fat diet (HFD) has been implicated as a pathological modifier of brain diseases including neurodegenerative dementias, but the detailed molecular mechanisms remain largely unknown. Here we report that HFD suppresses PPAR{gamma}-mediated transcriptional expression of PQBP1, a RNA splicing factor implicated in human intellectual disability and Alzheimers disease. RNAseq-based comprehensive analyses of alternative RNA splicing (AS) in HFD-fed mice for 1 or 6 weeks and in PQBP1-cKO mice reveal their common changes, which weigh on synapse-related genes. Betweenness-based extraction of core molecules from the common changes reveals CASK, Cacnb1 and Cyfip2 as key molecules of the network. Both CASK and Cacnb1 regulate STXBP1, a causative gene for infantile epilepsy syndrome and an essential factor for synapse vesicle release, via their direct interaction. In addition, our analysis suggests that Syt1 plays a role specifically in HFD for 1 week. HFD-induced AS isoforms of CASK, Cacnb1, Cyfip2 and Syt1 impair pre-synapse vesicle release in primary neurons. AAV-PQBP1, AAV-CASK, AAV-Cacnb1, AAV-Cyfip2 or AAV-Syt1 rescues synapse and/or cognitive dysfunctions in HFD mice, genetically supporting the pathological PQBP1-presynase axis in HFD. Moreover, immunohistochemistry experiments suggest that the pathological axis plays roles not only in excitatory neurons, but also in inhibitory neurons of the brain. Collectively, our results unravel a novel molecular mechanism for brain dysfunction when mice are exposed to a HFD.

neuroscience↗

bioRxiv2025

Revealing Long-Term Multi-Factor Climate Impacts on Antarctic Phytoplankton: A Trend-Based Approach Using STL and Piecewise SEM

Climate change imposes multiple interacting stressors on ocean ecosystems. The Southern Ocean is among the regions where these impacts are particularly pronounced. Phytoplankton, which perform the bulk of primary production, both maintain the Antarctic marine food web and contribute to the role of the Southern Ocean as the largest oceanic sink for atmospheric CO2. Previous observational and modeling studies have revealed certain drivers-phytoplankton relationships and highlighted the important confounding factors. In this study, we quantified how climate and environmental drivers interact and influence phytoplankton biomass over a 20-year period, across the entire Southern Ocean, within a multi-factor framework. Specifically, we examined the relationships among atmospheric CO2, surface water pH, sea ice concentration, sea surface temperature, mixed layer depth, dissolved iron concentration, and chlorophyll a concentration. To perform this analysis, we introduced and applied two novel methodological approaches. Firstly, to address seasonal autocorrelation, we combined seasonal trend decomposition using LOESS (STL) with piecewise structural equation modeling (SEM). This approach allowed for robust estimation of long-term driver magnitudes and causal pathways, even in the presence of limited sample sizes and complex data structures. Secondly, given the highly interconnected nature of environmental drivers, we employed a data-driven SEM approach to objectively identify causal structures and avoid biases associated with a priori pathway selection. Our results show a clear signal of ocean acidification driven by increasing CO2, iron limitation of phytoplankton biomass during spring, and seasonal differences in both the magnitude and structure of the causal pathways, demonstrating the dynamic nature of seasonal processes in the Southern Ocean. This study presents the first Southern Ocean-wide, multi-factor assessment of climate and environmental impacts on phytoplankton biomass over a two-decade period. It introduces a methodological framework mitigates seasonal autocorrelation to accurately capture long-term seasonal trends, and demonstrates the utility of data-driven causal discovery in resolving complex ecological interactions.

ecology↗

bioRxiv2025

Genome assembly and annotation of the naked mole rat Heterocephalus glaber reared in Japan

The naked mole rat (NMR, Heterocephalus glaber) is a eusocial rodent that is native to northeastern Africa. NMRs exhibit extraordinary traits such as longevity, resistance to age-related decline, and remarkable hypoxia tolerance. Although the reference genome of this species has been determined because of its unique characteristics, the significance or role of intraspecific genomic variations remains unknown. In this study, we used PacBio long-read sequencing to generate a genome assembly of NMR reared in Japan. The assembled genome is 2.56 Gb. Benchmarking Universal Single-Copy Orthologs (BUSCO) revealed high completeness (95.2%). BRAKER3 estimated 26,714 protein-coding genes, and we successfully added functional annotations for 26,232 protein-coding genes using the functional annotation workflow. We identified 417 gene models that were previously undetectable in the reference genome of this species. We also identified structural and amino acid sequence variations between our assembly and the reference genome, suggesting the presence of intraspecific genomic variations. This new genomic resource could help uncover the molecular mechanisms underlying the behavioral and physiological traits of NMR.

genomics↗

bioRxiv2025

Phage lysis protein LysM acts as a wedge to block MurJ conformational changes

Many antibiotics target essential cellular processes. To combat multidrug-resistant bacteria, new antibacterial strategies are needed. In the peptidoglycan biogenesis pathway in Escherichia coli, MurJ, the lipid II flippase, is an essential membrane protein. The 37-residue protein M from the Levivirus phage, known as LysM or SglM, targets MurJ and induces cell lysis; however, its molecular mechanism remains unclear. Here, we present the cryo-EM structure of the MurJ/LysM (JM) complex at 3.09 [A] resolution, revealing that LysM interacts with the crevasse between TM2 and TM7 of MurJ, locking MurJ in an outward-facing conformation, with LysM acting like a wedge. Alanine-scanning mutagenesis and pull-down assays revealed key residues responsible for LysM function, and molecular dynamics simulations showed that LysM stabilizes MurJs outward-facing state. These findings demonstrate an unprecedented phage-derived mechanism for blocking lipid II transport, providing a structural framework for designing MurJ-targeted antimicrobial agents.

molecular biology↗

bioRxiv2025

Cerebellum involvement in visuo-vestibular interaction for the perception of gravitational direction: a repetitive transcranial magnetic stimulation study

Accurate perception of the direction of gravity relies on the integration of multisensory information, particularly from the visual and vestibular systems, within the brain. Although a recent study of patients with cerebellar degeneration suggested a cerebellar role in visuo-vestibular interaction in the perception of gravitational direction, direct evidence remains limited. To address this gap, we conducted two experiments with 42 healthy participants to evaluate the impact of repetitive 1-Hz transcranial magnetic stimulation (rTMS) over the posterior cerebellum on visual dependency, quantified by the subjective visual vertical bias induced by rotating optokinetic stimulation (OKS). Electric field simulations in high-resolution head models were used to ensure focal stimulation of the cerebellum at the group level. The results demonstrated that repetitive transcranial magnetic stimulation (rTMS) applied to the cerebellar vermis significantly attenuated the OKS-induced shift in visual vertical (SVV) bias. This effect was not observed when stimulation was applied to the early visual cortex (V1-2) or the cerebellar hemisphere. Also, the vermis rTMS had no effect on the judgement precision in the absence of visual motion cues, suggesting that the rTMS may reduce visual weight in visuo-vestibular processing by increasing visual motion noise rather than affecting vestibular function. These findings suggest a direct involvement of the cerebellar vermis in the visuo-vestibular interaction underlying the perception of gravitational direction, providing new insights into cerebellar contributions in human spatial orientation. Significance StatementThe cerebellum has been implicated in multisensory integration for spatial orientation, but its direct role in visuo-vestibular interactions remains limited. Using 1-Hz rTMS, we demonstrated that stimulation of the cerebellar vermis significantly reduced visual dependency in the perception of gravitational direction, as measured by the subjective visual vertical bias induced by rotating optokinetic stimulation. This effect was absent when adjacent areas, such as early visual cortex and the cerebellar hemisphere, were stimulated. These results suggest that the cerebellar vermis is directly involved in visuo-vestibular interaction, providing new insights into the cerebellar contribution to spatial orientation in humans.

neuroscience↗

bioRxiv2025

Investigation of the HLA locus in autopsy-confirmed progressive supranuclear palsy

ObjectivesProgressive supranuclear palsy (PSP) is a neurodegenerative disease showing pathological tau accumulation in subcortical neurons and glial cells. The human leukocyte antigen (HLA) locus on chromosome 6 is a polymorphic region with complex linkage patterns that has been implicated in several autoimmune and neurological disorders. The HLA locus has not been systematically examined in PSP. It is unclear whether tau and HLA can interact to induce an autoimmune disease mechanism. MethodsWe evaluated an autopsy confirmed PSP cohort (n=44) and compared allele/haplotype frequencies to those of the reference group of a local deceased Canadian donor pool. We performed HLA/Tau peptide binding prediction and modelling of HLA Class II and Tau Peptide interactions. FindingsOdds ratio was 2.94 (95% CI 1.01 to 8.55; p=0.047) for DQB1*06:01 allele, and 2.59 (95% CI 1.39 to 4.83; p=0.0025) for the narcolepsy associated haplotype (DRB1*15:01DQB1*06:02). One patient with 4 repeat tau PSP type pathology was a carrier of the IgLON5-associated haplotype (DRB1*10:01DQB1*05:01). HLA/Tau peptide binding prediction and modelling of HLA Class II/Tau Peptide interactions revealed strong binding tau peptides but not the PSP protofilament fold for alleles DQA1*01:02DQB1*06:02 and DQA1*01:03DQB1*06:01. ConclusionOur study suggests that epitopes within the tau peptide may bind to HLA alleles that are found in a subset of PSP patients supporting the notion of an autoimmune pathophysiological component. These findings have implications for subtyping and stratifying patients for therapies, including those targeting immune modulation.

immunology↗

bioRxiv2024

Evolution and functioning of an X-A balance sex determination system in hops

Chromosomal sex determining systems with male heterogamety include actively male-determining-Y and X-A balance systems, both of which are found in animals and plants. The sex-determining genes have been identified in several active-Y plant systems, but the evolution and functioning of X-A balance systems remains mysterious. To study this, we sequenced and compared the genomes of two hop species. The evolution of the hop X-A balance system involved an ancient recombination suppression event across a large X chromosome region shared by both species. In one species, an autosome fused to this ancestral sex chromosome, and recombination was subsequently suppressed again. The two evolutionary strata created in this neo-X have degenerated to different degrees, and evolved correspondingly different dosage compensation levels that correlate with histone modification patterns. Finally, we identified an X-specific ETR1-like ethylene receptor in the ancestral X region. Its dosage may affect sex determination, as part of the counting mechanism of this X-A balance system. One sentence summaryBased on whole genome sequences of the cultivated hop, Humulus lupulus, and its wild relative H. japonicus, we describe the evolution of sex chromosomal regions, three of which that evolved region-specific dosage compensation, and identify a candidate gene involved in their X-A balance sex determining system.

evolutionary biology↗

bioRxiv2024

Centromeric repeat diversity underlies non-Mendelian segregation pattern in hop (Humulus lupulus)

Aberrant meiosis in plants often leads to aneuploidy, genetic instability, and sterility. This can occur due to several factors, including chromosome misalignment, defective synapsis or environmental factors that may result in unusual genetic combinations in the offsprings. Unusual chromosome behavior during male meiosis in Humulus lupulus is linked to irregular chromosome segregation and genome instability. However, the origin of meiotic instability remains unclear. We analyzed the centromeric landscape of H. lupulus to determine its role in aberrant chromosomal segregation during cell division. Using a combination of bioinformatic, molecular and cytogenetic approaches, we identified new centromeric repeats and revealed two types of centromeric organizations. Cytogenetic localization on metaphase chromosomes confirmed the genomic distribution of major repeat arrays and revealed unique features that contribute to aberrant segregation. Two centromeric types are composed of the major repeats SaazCEN and SaazCRM1 which are further accompanied by chromosome-specific centromeric satellites, Saaz40, Saaz293, Saaz85, and HuluTR120. Chromosome 2 displays unbalanced segregation during the cell division, implicating an important role for its centromere structure in segregation patterns. Moreover, Saaz293 is a new marker for studying aneuploidy in hop. Our findings provide new insights on chromosome segregation in hop and highlight the diversity and complexity of the centromere organization in H. lupulus.

plant biology↗

bioRxiv2024

Co-existence of ST-Segment Depression and Exaggerated Blood Pressure Response in Older Runners

Exercise stress tests are typically performed on symptomatic patients and those at elevated risks of ischemic heart disease. In more recent years, these tests are increasingly recommended for masters athletes who regularly perform exercise training. In the sample of apparently healthy physically active older adults who were recruited for a research study to evaluate exercise economy, we found the coexistence of ST-segment depression and exaggerated BP response in older runners. These findings are consistent with the notion that the screening and assessment of cardiovascular risks should be extended to masters athletes who vigorously train regularly and are seemingly healthy.

physiology↗

bioRxiv2024

Accelerated pseudogenization in ancient endosymbionts of giant scale insects

Symbiotic microorganisms are subject to a complex interplay of environmental and population-genetic pressures that drive their gene loss. Despite the widely held perception that ancient symbionts have stable genomes, even tiny genomes experience ongoing pseudogenization. Whether these tiny genomes also experience bursts of rapid gene loss is, however, less understood. Giant scale insects (Monophlebidae) feed on plant sap and rely on the symbiotic bacterium Walczuchella which provides them with essential nutrients. When compared to other ancient symbionts with similar genome sizes such as Karelsulcia, Walczuchellas genome was previously reported as unusually pseudogene-rich (10 % of coding sequences). However, this result was based on only one genome assembly raising questions about the assembly quality or a recent ecological shift such as co-symbiont acquisition driving the gene loss. Here, we generated six complete genomes of Walczuchella from three genera of giant scales, each with distinct co-symbiotic partners. We show that all the genomes are highly degraded and particularly genes related to the cellular envelope and energy metabolism seem to be ongoing pseudogenization. Apart from general mechanisms driving genome reduction such as the long-term intracellular lifestyle with transmission bottlenecks, we hypothesize that a more profound loss of DNA replication and repair genes together with recent co-obligate symbiont acquisitions likely contribute to the accelerated degradation of Walczuchella genomes. Our results highlight that even ancient symbionts with small genomes can experience significant bursts of gene loss when stochastic processes erase a gene that accelerates gene loss or when the selection pressure changes such as after cosymbiont acquisition.

genomics↗

bioRxiv2024

A ground surface rolling method for detecting environmental DNA of terrestrial animals

Biological information obtained from environmental DNA has been helpful for conservation of ecosystems and biodiversity. Methods for environmental DNA of terrestrial habitats are limited such as sampling of water near terrestrial habitat and of shoveled soil, whereas those of aquatic habitats are well-established. We developed a method using a sampler for terrestrial habitat utilizing a combination of a simple rotating body and a single-use non-woven fabric collector as a sampler, enabling sample collection from wide area of various surfaces without power supply. The sampler was applied to collect 90 ground surface and 29 water samples in a secondary nature environment, resulted in the detection of 53 species of birds and mammals in total. The result covered 92% of the species detected by cameras installed in front of the sampling areas, validating the sensitivity of the method. Time course analysis also revealed that the timing of the detection of birds matched that of the birds actual arrival. These results suggest that our labor-saving method could provide accurate and time-resolved data for biodiversity monitoring of terrestrial areas. Combining with established aquatic environmental analysis, the sampler would enable systematic monitoring of both aquatic and terrestrial habitats, enhancing our understanding of the whole ecosystem.

ecology↗

bioRxiv2024

Intergenerational transmission of the structure of the auditory cortex and reading skills

High-level cognitive skill development relies on genetic and environmental factors, tied to brain structure and function. Inter-individual variability in language and music skills has been repeatedly associated with the structure of the auditory cortex: the shape, size and asymmetry of the transverse temporal gyrus (TTG) or gyri (TTGs). TTG is highly variable in shape and size, some individuals having one single gyrus (also referred to as Heschls gyrus, HG) while others presenting duplications (with a common stem or fully separated) or higher-order multiplications of TTG. Both genetic and environmental influences on childrens cognition, behavior, and brain can to some to degree be traced back to familial and parental factors. In the current study, using a unique MRI dataset of parents and children (135 individuals from 37 families), we ask whether the anatomy of the auditory cortex is related to reading skills, and whether there are intergenerational effects on TTG(s) anatomy. For this, we performed detailed, automatic segmentations of HG and of additional TTG(s), when present, extracting volume, surface area, thickness and shape of the gyri. We tested for relationships between these and reading skill, and assessed their degree of familial similarity and intergenerational transmission effects. We found that volume and area of all identified left TTG(s) combined was positively related to reading scores, both in children and adults. With respect to intergenerational similarities in the structure of the auditory cortex, we identified structural brain similarities for mother-child pairs of the 1st TTG (HG) (in terms of volume, area and thickness for the right HG, and shape for the left HG) and of the lateralization of all TTG(s) surface area for father-child pairs. Both the HG and TTG-lateralization findings were significantly more likely for parent-child dyads than for unrelated adult-child pairs. Furthermore, we established characteristics of parents TTG that are related to better reading abilities in children: fathers small left HG, and a small ratio of HG to planum temporale. Our results suggest intergenerational transmission of specific structural features of the auditory cortex (not directly linked to childrens reading outcomes); these may arise from genetics and/or from shared environment.

neuroscience↗

bioRxiv2024

Effects of cognitive load and years of experience on phase-amplitude coupling in simultaneous interpretation

Simultaneous interpretation is a highly cognitively demanding task that requires constant attention switching between languages. Interest continues to grow in the contribution of phase-amplitude coupling (PAC), which involves the cooperative interaction of multiple oscillations and working memory. In this study, we established subjective definitions for cognitive load levels based on the subjective word familiarity of simultaneous interpretation, categorizing them as low, medium, or high. We then compared the changes in the PAC patterns between experienced interpreters and beginners. Experienced interpreters exhibited an increase in PAC, including theta-gamma PAC, which is linked to working memory, as well as theta-beta PAC, alpha-beta PAC and alpha-gamma PAC, with rising cognitive load levels in simultaneous interpreting. This suggests that experienced simultaneous interpreters choose a more adaptive neural processing strategy in response to the cognitive demands of interpretation language. In contrast, beginner interpreters do not show such changes in PACs, indicating either an underdeveloped or a different neurological approach to the cognitive load levels of interpretation language. The difference in PAC responses between the two groups reflects varying cognitive and interpretive strategies in the brain, where experienced interpreters might utilize more advanced neural mechanisms to manage higher levels of difficulty in simultaneous interpretation.

neuroscience↗

bioRxiv2023

Genome sequence and cell biological toolbox of the highly regenerative, coenocytic green feather alga Bryopsis

Green feather algae (Bryopsidales) undergo a unique life cycle in which a single cell repeatedly executes nuclear division without cytokinesis, resulting in the development of a thallus (> 100 mm) with characteristic morphology called coenocyte. Bryopsis is a representative coenocytic alga that has exceptionally high regeneration ability: extruded cytoplasm aggregates rapidly in seawater, leading to the formation of protoplasts. However, the genetic basis of the unique cell biology of Bryopsis remains poorly understood. Here, we present a high-quality assembly and annotation of the nuclear genome of Bryopsis sp. (90.7 Mbp, 27 contigs, N50 = 6.7 Mbp, 14,034 protein-coding genes). Comparative genomic analyses indicate that the genes encoding BPL-1/Bryohealin, the aggregation-promoting lectin, are heavily duplicated in Bryopsis, whereas homologous genes are absent in other Ulvophycean algae, suggesting the basis of regeneration capability of Bryopsis. Bryopsis sp. possesses >30 kinesins but only a single myosin, which differs from other green algae that have multiple types of myosin genes. Consistent with this biased motor toolkit, we observed that the bidirectional motility of chloroplasts in the cytoplasm was dependent on microtubules but not actin in Bryopsis sp. Unexpectedly, most genes required for cytokinesis in plants are present in Bryopsis, including those in the SNARE or kinesin superfamily. Nevertheless, a kinesin crucial for cytokinesis initiation in plants (NACK/Kinesin-7II) is hardly expressed in the coenocytic part of the thallus, possibly underlying the lack of cytokinesis in this portion. The present genome sequence lays the foundation for experimental biology in coenocytic macroalgae. Significance statementThe exceptionally coenocytic body and remarkable regeneration ability of Bryopsis have attracted biologists for years. However, molecular biological tools remain underdeveloped, partly due to the lack of genome information. Here, we report high-quality assembly and annotation of the genome, providing a crucial resource for experimental biology and genomics studies of Bryopsis. Furthermore, comparative genomic analysis reveals a unique gene repertoire that possibly underlies the highly regenerative coenocytic body.

plant biology↗