bioRxiv Science⌕ Search

Biology subjects

Tamimi, R.

Publications and source records attributed to Tamimi, R..

2 recordsLinked to original sources

Feasibility of Precision Functional Mapping in Youth Multi-Echo fMRI Data

There is growing interest in identifying brain function underlying adolescent cognition, personality, and psychopathology. One promising approach is Precision Functional Mapping (PFM) of MRI functional connectivity, a data-intensive method for characterizing individualized brain networks. Foundational studies suggest that PFM can detect stable, task-responsive, and clinically relevant networks. Studies demonstrate that both functional connectivity reliability and network stability improve with increasing data quantity, although benchmark estimates vary across populations, preprocessing pipelines, and MRI acquisition approaches. Accordingly, it is important to understand how PFM performs in adolescent populations and with multi-echo fMRI acquisition. In a case study of eight youth (ages 10-17), we applied PFM to 80-minutes of combined resting-state and task-based fMRI. The resulting networks were highly modular, consistent with adult templates, and without evidence of structural registration artifacts. Functional connectivity reliability compared favorably to prior single-echo studies, with multivariate similarity and ICC estimates showing early stabilization around 10-15 minutes despite continued improvement with additional data. Trait-like stability increased gradually with acquisition time and a Bayesian algorithm (MS-HBM) demonstrated higher stability than Infomap. Across algorithms, stability was greatest in sensory networks (somatomotor, auditory, visual). Furthermore, when evaluating task-based responses to threat and attention paradigms, only the auditory network consistently benefited from individualized mapping over group template networks. These findings suggest that, with constrained scanning time, PFM is especially effective for characterizing sensory and perceptual networks in adolescents. Bridging the methodological divide between deeply sampled individual cases and large-scale developmental studies will require further innovation and validation.

neuroscience↗

A comprehensive survey of genetic variation in 20,691 subjects from four large cohorts

The Nurses Health Study (NHS), Nurses Health Study II (NHSII), Health Professionals Follow Up Study (HPFS) and the Physicians Health Study (PHS) have collected detailed longitudinal data on multiple exposures and traits for approximately 310,000 study participants over the last 35 years. Over 160,000 study participants across the cohorts have donated a DNA sample and to date, 20,691 subjects have been genotyped as part of genome-wide association studies (GWAS) of twelve primary outcomes. However, these studies utilized six different GWAS arrays making it difficult to conduct analyses of secondary phenotypes or share controls across studies. To allow for secondary analyses of these data, we have created three new datasets merged by platform family and performed imputation using a common reference panel, the 1,000 Genomes Phase I release. Here, we describe the methodology behind the data merging and imputation and present imputation quality statistics and association results from two GWAS of secondary phenotypes (body mass index (BMI) and venous thromboembolism (VTE)).\n\nWe observed the strongest BMI association for the FTO SNP rs55872725 ({beta}=0.45, p=3.48x10-22), and using a significance level of p=0.05, we replicated 19 out of 32 known BMI SNPs. For VTE, we observed the strongest association for the rs2040445 SNP (OR=2.17, 95% CI: 1.79-2.63, p=2.70x10-15), located downstream of F5 and also observed significant associations for the known ABO and F11 regions. This pooled resource can be used to maximize power in GWAS of phenotypes collected across the cohorts and for studying gene-environment interactions as well as rare phenotypes and genotypes.

epidemiology↗