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Talignani, L.

Publications and source records attributed to Talignani, L..

2 recordsLinked to original sources

Aedes vittatus in Haiti: continued expansion across the Caribbean and implications for the Americas

BackgroundAedes vittatus, an emerging invasive species and arboviral vector with high ecological plasticity and dispersal capacity, is expanding in the Caribbean, being detected in the Dominican Republic, Cuba, and Jamaica and recently in Yucatan, Mexico. ObjectivesThis study aimed to provide evidence of the establishment of Ae. vittatus in Haiti. MethodsLarval surveys were done across 12 localities around Cap-Haitien, in the North-East department of Haiti, the specimens were identified morphologically and confirmed by COI DNA barcoding. FindingsWe report, for the first time, the detection of the invasive vector Aedes (Fredwardsius) vittatus in Haiti, confirmed morphologically and molecularly, and being established in half of the municipalities sampled. Phylogenetic analyses group Haitian specimens with Caribbean and American populations, closely related to Mexico, indicating regional expansion. Main conclusionGiven its role as a vector of chikungunya, dengue, Zika and yellow fever, strengthened entomological surveillance and early detection in North America and the Caribbean are urgently needed.

ecology↗

ViroSeek: a viral detection pipeline for second-generation sequencing

Arbovirus emergences represent a rising public health issue and are exacerbated by climate change and globalization. Virome analysis has become a key approach for monitoring and managing infectious diseases, yet existing tools often remain technically complex and inaccessible to non-specialists. In this context, we present ViroSeek, a reproducible and accessible bioinformatics pipeline specifically designed for the taxonomic analysis of second-generation sequencing data from target-enriched libraries. ViroSeek performs a series of automated steps: quality control, trimming, host and bacterial sequence removal, assembly, taxonomic assignment, read remapping for quantification, and PCR duplicate removal. The whole process is designed to produce a clear, usable viral taxonomy table that is suitable for diversity studies. ViroSeek was empirically validated on enriched control samples containing a known panel of viruses. All the expected viruses were correctly detected. Bacterial and host contaminant sequences were effectively removed. The pipeline is freely available and fully documented, supporting its adoption and adaptation by the research community.

bioinformatics↗