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Suryawanshi, S.

Publications and source records attributed to Suryawanshi, S..

2 recordsLinked to original sources

A surrogate workflow for virtual population development: designing an amenable proxy for a hypothesis-test inspired nonlinear goodness-of-fit

QSP models are increasingly being applied to drug development. Calibrating virtual populations (VPops) to clinical data helps explore patient variability, study populations of interest, and predict clinical outcomes for new therapies. In previous work, we have developed the QSP Toolbox (1, 2), a library of tools and workflows for developing VPops. The aim is to create a VPop that fits clinical data from a variety of sources and with a variety of datatypes, allowing for differences in the quality of the data. However, our VPop workflow has been hampered by the need to perform repeated optimization of "prevalence weights". In this article, we explain how we sped up our VPop development workflow by using convex quadratic objective function as a sort of proxy for our highly nonlinear goodness-of-fit function. We illustrate with two case studies the efficacy of our "surrogate" workflow for generating VPops with good p-fits. We find that the surrogate workflow can calibrate VPops much faster than the original workflow because it saves so much time on the prevalence-weighting optimizations. Graphic abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=154 SRC="FIGDIR/small/649406v1_ufig1.gif" ALT="Figure 1"> View larger version (32K): org.highwire.dtl.DTLVardef@1d41b5aorg.highwire.dtl.DTLVardef@4fbdeeorg.highwire.dtl.DTLVardef@13e88bborg.highwire.dtl.DTLVardef@82ed3a_HPS_FORMAT_FIGEXP M_FIG C_FIG

systems biology↗

Tetrahymena RIB72A and RIB72B are Microtubule Inner Proteins in the ciliary doublet microtubules

Doublet and triplet microtubules are essential and highly stable core structures of centrioles, basal bodies, cilia and flagella. In contrast to dynamic cytoplasmic microtubules, their luminal surface is coated with regularly arranged Microtubule Inner Proteins (MIPs). However, the protein composition and biological function(s) of MIPs remain poorly understood. Using genetic, biochemical and imaging techniques we identified Tetrahymena RIB72A and RIB72B proteins as ciliary MIPs. Fluorescence imaging of tagged RIB72A and RIB72B showed that both proteins co-localize to Tetrahymena cilia and basal bodies, but assemble independently. Cryo-electron tomography of RIB72A and/or RIB72B knockout strains revealed major structural defects in the ciliary A-tubule involving MIP1, MIP4 and MIP6 structures. The defects of individual mutants were complementary in the double mutant. All mutants had reduced swimming speed and ciliary beat frequencies, and high-speed video imaging revealed abnormal highly curved cilia during power stroke. Our results show that RIB72A and RIB72B are crucial for the structural assembly of ciliary A-tubule MIPs and are important for proper ciliary motility.\n\nSUMMARYMicrotubule Inner Proteins (MIPs) bind to the luminal surface of highly stable microtubules. Combining cell biology and cryo-electron tomography, Stoddard et al. show that RIB72A and RIB72B are conserved MIPs in ciliary doublet microtubules and that they are important for proper ciliary motility.

cell biology↗