bioRxiv Science⌕ Search

Biology subjects

Subsoontorn, P.

Publications and source records attributed to Subsoontorn, P..

2 recordsLinked to original sources

Conjugative Transfer from Escherichia coli to Gram-positive Bacteria: A Systematic Review and Meta-Analysis

Conjugative DNA transfer is a major driver of microbial evolution and an essential tool for biotechnological applications. While conjugation between Gram-negative and Gram-positive bacteria has been observed, its efficiency and underlying principles remain poorly understood. This systematic review and meta-analysis assess the success and influencing factors of Escherichia coli-to-Gram-positive conjugation. A systematic search of the PubMed, Crossref and Web of Science database (up to July 2025) identified 41 studies reporting E. coli-to-Gram-positive conjugation, comprising 645 measurements. Studies were included based on experimental evidence of conjugative transfer and reported efficiency values. Data extraction was performed manually, and statistical analyses were conducted to identify key trends. We found that E. coli-to-Gram-positive conjugation is significantly less efficient than E. coli-to-E. coli or E. coli-to-other Gram-negative bacteria. However, certain recipient strains and optimized conditions enable surprisingly high efficiencies, within 1-2 orders of magnitude of E. coli-to-E. coli conjugation. Strategies that improve efficiency include altering plasmid methylation patterns, optimizing cation concentrations, and modifying donor-recipient ratios. Limitations include potential bias toward well-studied bacterial groups (e.g., Streptomycetaceae), variability in experimental conditions, and incomplete reporting in some studies. Further research should explore additional recipient strains, refine conjugation mechanisms, and optimize transfer conditions to enhance DNA delivery to non-model microbes. Understanding these processes may pave the way for more efficient and universal DNA transfer methods across diverse microbial taxa. ImportanceBacteria have an incredible ability to share genetic material with each other, a process that drives evolution and enables survival in changing environments. Conjugation allows bacteria to pass DNA from one cell to another. Scientists have used this process to engineer microbes for medicine, agriculture, and environmental cleanup. However, transferring DNA between very different types of bacteria, especially from E. coli (a Gram-negative bacterium) to Gram-positive bacteria, has remained a challenge. This study reviewed over 600 experiments to understand when and how such transfers work best. Surprisingly, the researchers found that under certain conditions, DNA can move across this divide much more efficiently than previously thought. These insights could help scientists develop universal DNA delivery tools, unlocking the potential of hard-to-engineer bacteria for biotechnology. In a world that increasingly relies on microbes for sustainable solutions, improving how we "send instructions" into these microbial workers is a critical step forward.

microbiology↗

Hands-free control of heterologous gene expression in batch cultures

BackgroundAutonomous cell-based control of heterologous gene expression can simplify batch-culture bioprocessing by eliminating external monitoring and extrinsic control of culture conditions. Existing approaches use auto-induction media, synthetic cell-cell communication systems, or application-specific biosensors. A simpler, resource-efficient, and general-purpose expression control system responsive to common changes during batch culture would be useful.\n\nResultsWe used native E.coli promoters and recombinase-based switches to repurpose endogenous transcription signals for control of heterologous gene expression. Specifically, natural changes in transcription from endogenous promoters result in recombinase expression at different phases of batch culture. So-expressed recombinases invert a constitutive promoter regulating expression of arbitrary heterologous genes. We realized reversible and single-use switching, reduced static and dynamic cell-to-cell variation, and overall expression amplification. We used \"off-the-shelf\" genetic parts and abstraction-based composition frameworks to realize reliable forward engineering of our synthetic genetic systems.\n\nConclusionWe engineered autonomous control systems for regulating heterologous gene expression. Our system uses generic endogenous promoters to sense and control heterologous expression during growth-phase transitions. Our system does not require specialized auto-induction media, production or activation of quorum sensing, or the development of application-specific biosensors. Cells programmed to control themselves could simplify existing bioprocess operations and enable the development of more powerful synthetic genetic systems.

synthetic biology↗