Biology subjects

Stensmyr, M. C.

Publications and source records attributed to Stensmyr, M. C..

4 recordsLinked to original sources

bioRxiv2025

YOLito: A generalizable model for automated mosquito detection

Understanding mosquito behavior is key to advancing research in ecology, evolution, and disease control, yet most behavioral assays rely on human-dependent methods, such as real-time observation or manual frame-by-frame annotation, limiting throughput and reproducibility. We present YOLito, a domain-generalized AI model for automated mosquito detection and behavioral quantification. Built on the Ultralytics YOLO framework and enhanced with Slicing-Aided Hyper Inference (SAHI), YOLito accurately detects multiple mosquitoes across diverse backgrounds and imaging conditions. Trained on a globally assembled dataset of 38,547 annotated images from 35 experimental setups across six laboratories and three public datasets, YOLito achieved high performance on unseen data (precision = 0.95; recall = 0.91) and generalized across mosquito species (Aedes, Anopheles, Culex) and assay types, including blood-feeding, sugar-feeding, and oviposition. By automating behavioral scoring, YOLito transforms traditional assays into scalable and reproducible experimental platforms. The accompanying open-source toolkit enables high-throughput extraction of metrics such as visit frequency, duration, and distance traveled, providing a standardized and extensible framework that bridges computer vision and vector biology.

animal behavior and cognition↗

bioRxiv2023

Genomes From 25 Historical Drosophila melanogaster Specimens Illuminate Adaptive and Demographic Changes Across More Than 200 Years of Evolution

The ability to perform genomic sequencing on long-dead organisms is opening new frontiers in evolutionary research. These opportunities are especially profound in the case of museum collections, from which countless documented specimens may now be suitable for genomic analysis. Here, we report 25 newly sequenced genomes from museum specimens of the model organism Drosophila melanogaster, including the oldest extant specimens of this species. By comparing historical samples ranging from the early 1800s to 1933 against modern day genomes, we document evolution across thousands of generations, including time periods that encompass the species initial occupation of northern Europe and an era of rapidly increasing human activity. At the genome-wide level, we find that historical flies from the same time and place show much greater evidence for relatedness than flies from modern collections, and some show evidence of inbreeding as well, potentially reflecting either much smaller local population sizes in the past or else the specific circumstances of the collections. We also find that the Lund, Sweden population underwent local genetic differentiation during the early 1800s to 1933 interval (potentially due to accelerated drift) but then became more similar to other European populations thereafter (potentially due to increased migration). Within each time period, our temporal sampling allows us to document compelling candidates for recent natural selection. In some cases, we gain insights regarding previously implicated selection candidates, such as ChKov1, for which our inferred timing of selection favors the hypothesis of antiviral resistance over insecticide resistance. Other candidates are novel, such as the circadian-related gene Ahcy, which yields a selection signal that rivals that of the DDT resistance gene Cyp6g1. These insights deepen our understanding of recent evolution in a model system, and highlight the potential of future museomic studies.

evolutionary biology↗

bioRxiv2019

Geosmin attracts Aedes aegypti mosquitoes to oviposition sites

Geosmin is one of the most recognizable and common microbial smells on the planet. Some insects, like mosquitoes, require microbial-rich environments for their progeny, whereas for other insects such microbes may prove dangerous. In the vinegar fly Drosophila melanogaster, geosmin is decoded in a remarkably precise fashion and induces aversion, presumably signaling the presence of harmful microbes. We have here investigated the effect of geosmin on the behavior of the yellow fever mosquito Aedes aegypti. In contrast to flies, geosmin is not aversive in mosquitoes but stimulates egg-laying site selection. Female mosquitoes could associate geosmin with microbes, including cyanobacteria consumed by larvae, who also find geosmin - as well as geosmin producing cyanobacteria - attractive. Using in vivo multiphoton imaging from mosquitoes with pan-neural expression of the calcium reporter GCaMP6s, we show that Ae. aegypti code geosmin in a similar fashion to flies, i.e. with extreme sensitivity and with a high degree of selectivity. We further demonstrate that geosmin can be used as bait under field conditions, and finally we show that geosmin, which is both expensive and difficult to obtain, can be substituted by beetroot peel extract, providing a cheap and viable mean of mosquito control and surveillance in developing countries.

neuroscience↗

bioRxiv2018

Discovery of Drosophila melanogaster from Wild African Environments and Genomic Insights into Species History

A long-standing enigma concerns the geographic and ecological origins of the intensively studied vinegar fly, Drosophila melanogaster, a globally widespread species [1] which \"has invariably appeared to be a strict human commensal\" [2]. In spite of its sub-Saharan origins, this species has never been reported from undisturbed wilderness environments that might reflect its pre-commensal niche [3]. Here, we document the collection of 288 D. melanogaster individuals from African wilderness areas in Zambia, Zimbabwe, and Namibia. After sequencing the genomes of 17 flies collected from Kafue National Park, Zambia, we found reduced genetic diversity relative to town populations, elevated chromosomal inversion frequencies, and strong differences at specific genes including known insecticide targets. Combining these new genomes with prior data enabled us to gain novel insights into the history of this species geographic expansion. Our demographic estimates indicated that an expansion from southern Africa began approximately 10,000 years ago, with a Saharan crossing soon after, but expansion from the Middle East into Europe did not begin until roughly 1,400 years ago. This improved model of demographic history will provide a critical resource for future evolutionary and genomic studies of this key model organism. Our results add historical context to the species human association, and the opportunity to study wilderness populations opens the door for future studies on the biological basis of its adaptation to human environments.

genomics↗