bioRxiv Science⌕ Search

Biology subjects

Srebrow, A.

Publications and source records attributed to Srebrow, A..

2 recordsLinked to original sources

Differential contribution of the RNA recognition motifs to SRSF1 protein interaction network

The protein SRSF1, initially identified as a splicing factor, is currently known to participate in a variety of cellular processes. However, its role and regulatory mechanisms in these processes remain incompletely understood. Using a SILAC proteomic approach, we have characterised the SRSF1 interactome, thereby identifying multiple diverse protein interaction partners of SRSF1 and the molecular complexes with which it is associated. Given that the RNA-binding ability of SRSF1 is necessary for many of its activities, we extended the analysis of the SRSF1 interactome to compare the wild type protein against two site-specific SRSF1 variants, bearing mutations in each of its two RNA recognition motifs (RRMs). The first mutation disrupted the canonical RRM (RRM1), while the second affected the pseudo-RRM (RRM2). Interestingly, the data show clear differences between the SRSF1 interacting proteins, depending on the functional status of each RRM domain. In particular, a functional RRM1 was critical for maintaining interactions with multiple partners, especially those involved in translation-related processes, showing a far greater loss of interactions upon mutation than RRM2. This study provides valuable new insights into the broader cellular roles and interaction landscape of SRSF1.

molecular biology↗

SUMO conjugation regulates the activity of the Integrator complex

RNA pol II transcribes snRNA genes in close proximity to Cajal bodies, subnuclear compartments that depend on the SUMO isopeptidase USPL1 for their assembly. We show here that overexpression of USPL1 alters snRNA 3-end cleavage, a process carried out by the Integrator complex. Beyond its role in snRNA biogenesis, this complex is responsible for regulating the expression of different non-coding and coding transcripts. We validated several subunits of the complex as SUMO conjugation substrates, and found that the SUMOylation of INTS11 subunit is regulated by USPL1. We defined Lys 381, Lys 462 and Lys 475 as bona fide SUMO attachment sites within INTS11 and observed that SUMOylation of this protein is required for efficient Integrator activity. Moreover, while an INTS11 SUMOylation deficient mutant is still capable of interacting with INTS4 and INTS9, its interaction with other subunits of the complex is affected. This mutant also shows a more cytoplasmatic localization than the wild type protein. These findings point to a regulatory role of SUMO conjugation on Integrator activity and suggest the involvement of INTS11 SUMOylation in the assembly of the complex. Furthermore, this work adds the Integrator-dependent RNA processing to the growing list of cellular processes regulated by SUMO conjugation.

molecular biology↗