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Spencer, M. J.

Publications and source records attributed to Spencer, M. J..

4 recordsLinked to original sources

Emergence of Sparse Coding, Balance and Decorrelation from a Biologically-Grounded Spiking Neural Network Model of Learning in the Primary Visual Cortex

1Many computational studies attempt to address the question of information representation in biological neural networks using an explicit optimization based on an objective function. These approaches begin with principles of information representation that are expected to be found in the network and from which learning rules can be derived. This study approaches the question from the opposite direction; beginning with a model built upon the experimentally observed properties of neural responses, homeostasis, and synaptic plasticity. The known properties of information representation are then expected to emerge from this substrate. A spiking neural model of the primary visual cortex (V1) was investigated. Populations of both inhibitory and excitatory leaky integrate-and-fire neurons with recurrent connections were provided with spiking input from simulated ON and OFF neurons of the lateral geniculate nucleus. This network was provided with natural image stimuli as input. All synapses underwent learning using spike-timing-dependent plasticity learning rules. A homeostatic rule adjusted the weights and thresholds of each neuron based on target homeostatic spiking rates and mean synaptic input values. These experimentally grounded rules resulted in a number of the expected properties of information representation. The network showed a temporally sparse spike response to inputs and this was associated with a sparse code with Gabor-like receptive fields. The network was balanced at both slow and fast time scales; increased excitatory input was balanced by increased inhibition. This balance was associated with decorrelated firing that was observed as population sparseness. This population sparseness was both the cause and result of the decorrelation of receptive fields. These observed emergent properties (balance, temporal sparseness, population sparseness, and decorrelation) indicate that the network is implementing expected principles of information processing: efficient coding, information maximization (infomax), and a lateral or single-layer form of predictive coding. These emergent features of the network were shown to be robust to randomized jitter of the values of key simulation parameters.

neuroscience↗

Expert Panel Curation of 31 Genes in Relation to Limb Girdle Muscular Dystrophy

IntroductionLimb girdle muscular dystrophies (LGMDs) are a group of genetically heterogeneous autosomal conditions with some degree of phenotypic homogeneity. LGMD is defined as having onset >2 years of age with progressive proximal weakness, elevated serum creatine kinase levels and dystrophic features on muscle biopsy. Advances in massively parallel sequencing have led to a surge in genes linked to LGMD. MethodsThe ClinGen Muscular Dystrophies and Myopathies gene curation expert panel (MDM GCEP, formerly Limb Girdle Muscular Dystrophy GCEP) convened to evaluate the strength of evidence supporting gene-disease relationships (GDR) using the ClinGen gene-disease clinical validity framework to evaluate 31 genes implicated in LGMD. ResultsThe GDR was exclusively LGMD for 17 genes, whereas an additional 14 genes were related to a broader phenotype encompassing congenital weakness. Four genes (CAPN3, COL6A1, COL6A2, COL6A3) were split into two separate disease entities, based on each displaying both dominant and recessive inheritance patterns, resulting in curation of 35 GDRs. Of these, 30 (86%) were classified as Definitive, 4 (11%) as Moderate and 1 (3%) as Limited. Two genes, POMGNT1 and DAG1, though definitively related to myopathy, currently have insufficient evidence to support a relationship specifically with LGMD. ConclusionsThe expert-reviewed assertions on the clinical validity of genes implicated in LGMDs form an invaluable resource for clinicians and molecular geneticists. We encourage the global neuromuscular community to publish case-level data that help clarify disputed or novel LGMD associations.

genetics↗

Neural Activity Shaping in Visual Prostheses with Deep Learning

ObjectiveThe visual perception provided by retinal prostheses is poor and limited to images constructed of phosphenes generated by the electrodes. One limiting factor has been the conventional strategy used to encode the target image into a stimulation pattern. Under this strategy, if the electrode density is high, the current spread of neighbouring unipolar stimuli overlaps, leading to blurred images. Simultaneous multipolar stimulation guided by the measured neural responses can attenuate excessive spread of excitation and allows for a more precise electrical input to the retina. However, it is far from trivial to predict what multipolar stimulus pattern will elicit the desired retinal response for a given target image. Here, we propose to solve this problem using an Artificial Neural Network (ANN) that could be trained with data acquired from the implant itself. ApproachOur method consists of two ANNs trained sequentially. The Measurement Predictor Network (MPN) is trained on data from the implant and is used to predict how the retina responds to multipolar stimulation by learning the forward model. The Stimulus Generator Network (STG) is trained on a large dataset of natural images and uses the trained MPN to determine efficient multipolar stimulus patterns by learning the inverse model. We validate our method in silico using a realistic model of retinal response to multipolar stimulation. Main ResultsWe show that the simulated retinal activations elicited with our ANN-based approach are considerably sharper when compared with the conventional method used in existing devices. The SGN finds multipolar stimulation patterns that are tuned to a specific retina, thus providing patient-specific stimuli. Also, due to its small computational cost, the SGN can output stimulation patterns at a very high rate. SignificanceOur novel protocol opens the door to personalized multipolar retinal stimulation, which may improve the visual experience and quality of life of retinal prosthesis users.

bioengineering↗

Quantifying Visual Acuity for Pre-Clinical Testing of Visual Prostheses.

Visual prostheses currently restore only limited vision. More research and pre-clinical work are required to improve the devices and stimulation strategies that are used to induce neural activity that results in visual perception. Evaluation of candidate strategies and devices requires an objective way to convert measured and modelled patterns of neural activity into a quantitative measure of visual acuity. This study presents an approach that compares evoked patterns of neural activation with target and reference patterns. A d-prime measure of discriminability determines whether the evoked neural activation pattern is sufficient to discriminate between the target and reference patterns and thus provide a quantified level of visual perception in the clinical Snellen and MAR scales. The measure was accurate in providing an estimate of the perceivable feature sizes in scaled standardized "C" and "E" optotypes. The approach was used to assess the visual acuity provided by two alternative stimulation strategies applied to simulated retinal implants with different phosphene sizes and electrode pitch configurations. It was found that when there is substantial overlap in neural activity generated by different electrodes, an estimate of acuity based only upon electrode pitch is incorrect; our proposed method gives an accurate result in these circumstances. Quantification of visual acuity using this approach in pre-clinical development will allow for more rapid and accurate prototyping of improved devices and neural stimulation strategies.

bioengineering↗