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Biology subjects

Smith, M. G.

Publications and source records attributed to Smith, M. G..

2 recordsLinked to original sources

Biodiversity and Conservation Priority Setting for the Vascular Flora of New Guinea

AimsNew Guinea is one of the worlds most floristically diverse islands, but its plant collection records are very uneven. We aim to identify which areas have the highest diversity of vascular plant genera, and which areas have the highest deforestation risk. Combining these findings we highlight priority regions for research and conservation. LocationNew Guinea Time period1900-2021 Taxa studiedTracheophyta (Vascular plants) MethodsWe obtained collection records and environmental variables and prepared a cost-distance map of New Guinea to indicate accessibility. We modelled the joint distribution of 1,156 genera with the HO_SCPLOWMSCC_SCPLOW package in R to predict biodiversity across space, accounting for collection bias. We combined these results with a genus-level phylogenetic tree to predict phylogenetic endemism. We then modelled deforestation risk with the R-INLA package, using forest clearance data and variables including cost-distance. We compared actual and predicted deforestation, and made predictions for 2021-25. Finally, we developed a combined measure of predicted biodiversity plus deforestation risk. ResultsA mean Spearmans rank correlation of 0.462 was obtained on five-fold cross-validation of the genus biodiversity model; bias-correction shifted the predicted distribution of biodiversity towards western New Guinea, but had less effect on estimates of phylogenetic endemism. Predictions of relative deforestation probability were accurate over 5 and 10 years (Spearman values 0.66 and 0.71). We postulate a deforestation debt to explain the persistence in accuracy. Over time, the areas which survive early deforestation gradually become more rewarding targets and the proportion of at-risk forest lost to clearance accumulates. Main conclusionsWe present a method for rapid assessment of biodiversity and deforestation risk in data-deficient tropical forest regions. Areas of high predicted biodiversity such as the Merauke and Jayapura lowlands are at high near-term risk from commercial deforestation, requiring urgent interventions to record and preserve threatened species.

ecology↗

OptoRheo: Simultaneous in situ micro-mechanical sensing and 3D imaging of live cell cultures

Biomechanical cues from the extracellular matrix (ECM) are essential for directing many cellular processes, from normal development and repair, to disease progression. To better understand cell-matrix interactions, we have developed a new instrument named OptoRheo that combines light sheet fluorescence microscopy with particle tracking microrheology. OptoRheo lets us image cells in 3D as they proliferate over several days while simultaneously sensing the mechanical properties of the surrounding extracellular and pericellular matrix at a sub-cellular length scale. OptoRheo can be used in two operational modalities (with and without an optical trap) to extend the dynamic range of microrheology measurements. We corroborated this by characterising the ECM surrounding live breast cancer cells in two distinct culture systems, cell clusters in 3D hydrogels and spheroids in suspension culture. This cutting-edge instrument will transform the exploration of drug transport through complex cell culture matrices and optimise the design of the next-generation of disease models.

bioengineering↗