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Smit, D.

Publications and source records attributed to Smit, D..

2 recordsLinked to original sources

Non-destructive Spatial Reconstruction of Plant Leaf Starch Using Reduced-Band SWIR Spectroscopy and Chemometric Modeling

1Non-structural carbohydrates (NSCs) are central to plant carbon allocation and physiological regulation, yet their quantification typically relies on destructive biochemical assays that lack spatial resolution. Here, we developed a shortwave infrared (SWIR) hyperspectral imaging workflow for non-destructive estimation and spatial reconstruction of starch-associated variation in strawberry leaves. The workflow combined automated hyperspectral segmentation, spectral preprocessing, Partial Least Squares Regression (PLSR), and constrained wavelength selection. Sample-level spectra extracted from 114 strawberry leaf samples grown across three different metabolic conditions were paired with destructive starch measurements and used to train models across the 900-1750 nm spectral range. A constrained greedy band-selection strategy revealed that predictive performance approached a plateau at approximately 12 wavelengths, indicating substantial spectral redundancy within the full hyperspectral dataset. The final reduced-band model achieved a cross-validated coefficient of determination (R2) of 0.771 {+/-} 0.066 and a root mean squared error (RMSE) of 0.743 {+/-} 0.098 mg g-1 fresh weight using repeated stratified 5-fold cross-validation. Pixel-wise application of the final model generated spatial starch-associated maps that preserved pronounced intra-leaf heterogeneity, including vein-associated spatial structure. These results demonstrate that starch-associated spectral information can be reconstructed from a constrained reduced-band SWIR framework while retaining sufficient predictive performance for spatial mapping. The identified wavelength reduction supports the feasibility of deployable multispectral systems for non-destructive carbohydrate sensing in plant phenotyping applications.

plant biology↗

Genetic correlation between background EEG oscillations and genetic generalized epilepsy

ObjectiveParoxysmal epileptiform abnormalities on electroencephalography (EEG) are the hallmark of epilepsies, but it is uncertain to what extent epilepsy and background EEG oscillations share neurobiological underpinnings. Here, we aimed to assess the genetic correlation between epilepsy and background EEG oscillations. MethodsConfounding factors, including the heterogeneous etiology of epilepsies and medication effects hamper studies on background brain activity in people with epilepsy. To overcome this limitation, we compared genetic data from a GWAS on epilepsy (n=12,803 people with epilepsy and 24,218 controls) with that from a GWAS on background EEG (n=8,425 subjects without epilepsy), in which background EEG oscillation power was quantified in four different frequency bands: alpha, beta, delta and theta. We replicated our findings in an independent epilepsy replication dataset (n=4851 people with epilepsy and 20,428 controls). To assess the genetic overlap between these phenotypes, we performed genetic correlation analyses using linkage disequilibrium score regression, polygenic risk scores and Mendelian randomization analyses. ResultsOur analyses show strong genetic correlations between genetic generalized epilepsy (GGE) with background EEG oscillations, primarily with the beta frequency band. Furthermore, we show that subjects with higher beta and theta polygenic risk scores have a significantly higher risk of having generalized epilepsy. Mendelian randomization analyses suggest a causal effect of GGE genetic liability on beta oscillations. SignificanceOur results point to shared biological mechanisms underlying background EEG oscillations and the susceptibility for GGE, opening avenues to investigate the clinical utility of background EEG oscillations in the diagnostic work-up of epilepsy.

genetics↗