bioRxiv ScienceSearch

Biology subjects

Smertenko, A.

Publications and source records attributed to Smertenko, A..

2 recordsLinked to original sources

Epidermal expression of a sterol biosynthesis gene regulates root growth by a non-cell autonomous mechanism in Arabidopsis

The epidermis has been hypothesized to play a signalling role during plant development. One class of mutants showing defects in signal transduction and radial patterning are those in sterol biosynthesis. The expectation is that sterol biosynthesis is a constitutive cell-autonomous process for the maintenance of basic cellular functions. The HYDRA1 (HYD1) gene of Arabidopsis encodes an essential sterol {Delta}8-{Delta}7 isomerase, and although hyd1 mutant seedlings are defective in radial patterning of several tissues, we show that the HYD1 gene is expressed primarily in the root epidermis. Cell type-specific transgenic activation of HYD1 transcription reveals that HYD1 expression in the epidermis of hyd1 null mutants is sufficient to rescue root patterning and growth. Unexpectedly, expression of HYD1 in the vascular tissues and root meristem, though not endodermis or pericycle, also leads to phenotypic rescue. Phenotypic rescue is associated with rescued patterning of the PIN1 and PIN2 auxin efflux carriers. The importance of the epidermis is in part due to its role as a site for tissue-specific sterol biosynthesis, and auxin is a candidate for a non-cell autonomous signal.

plant biology

Modeling Hormonal Control of Cambium Proliferation

Rise of atmospheric CO2 is one of the main causes of global warming. Catastrophic climate change can be avoided by reducing emissions and increasing sequestration of CO2. Trees are known to sequester CO2 during photosynthesis, and then store it as wood biomass. Thus, breeding of trees with higher wood yield would mitigate global warming as well as augment production of renewable construction materials, energy, and industrial feedstock. Wood is made of cellulose-rich xylem cells produced through proliferation of a specialized stem cell niche called cambium. Importance of cambium in xylem cells production makes it an ideal target for the tree breeding programs; however our knowledge about control of cambium proliferation remains limited. The morphology and regulation of cambium differs from stem cell niches that control axial growth. For this reason, translating the knowledge about axial growth to radial growth has limited use. Furthermore, genetic approaches cannot be easily applied because overlaying tissues conceal cambium from direct observation and complicate identification of mutants. To overcome the paucity of experimental tools in cambium biology, we constructed a Boolean network CARENET (CAmbium Regulation gene NETwork) for modelling cambium activity, which includes the key transcription factors WOX4 and HD-ZIP III as well as their potential regulators. Our simulations revealed that: (1) auxin, cytokinin, gibberellin, and brassinosteroids act cooperatively in promoting transcription of WOX4 and HD-ZIP III; (2) auxin and cytokinin pathways negatively regulate each other; (3) hormonal pathways act redundantly in sustaining cambium activity; (4) individual cells in the stem cell niches can have diverse molecular identities. CARENET can be extended to include components of other signalling pathways and be integrated with models of xylem and phloem differentiation. Such extended models would facilitate breeding trees with higher wood yield.

bioinformatics