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Slavich, E.

Publications and source records attributed to Slavich, E..

2 recordsLinked to original sources

How strong is enemy release? A systematic compilation across taxa and approaches.

The enemy release hypothesis posits that introduced species escape some of their predators, pathogens and parasites when they move to a new range. We used a systematic review to compile data from 691 quantifications of enemy release spanning plants, animals and algae in aquatic and terrestrial systems worldwide. Data from 311 biogeographic contrasts (between home and new range) revealed that on average, a species experience only 30% as much enemy pressure in their introduced range as they experience in their native range. In contrast, data from 380 community contrasts (between native and introduced species) revealed that introduced species experience on average 57% of the enemy pressure that their native congeners endure. Interestingly, one third (36%) of contrasts showed higher, rather than lower, enemy pressure on the introduced population. Enemy release was consistently strong in contrasts of the diversity of enemies, intermediate in contrasts comparing enemy damage, and not significant in contrasts of host fitness, suggesting that while introduced populations are attacked by fewer enemies, this does not always result in higher fitness. We also found that enemy release was higher in molluscs and fish but lower in insects and algae, indicating that certain taxa may be favoured by enemy release. We hope that an improved understanding of the extent to which introduced species are released from enemy pressures will help managers to identify good opportunities for biocontrol, and to understand the factors likely to be affecting the success of invasive species.

ecology↗

High temporal resolution RNA-seq time course data reveals mammalian lncRNA activationmirrors neighbouring protein-coding genes

BackgroundThe advent of next-generation sequencing revealed extensive transcription beyond protein-coding genes, identifying tens of thousands of long non-coding RNAs (lncRNAs). Selected functional examples raised the possibility that lncRNAs, as a class, may maintain broad regulatory roles. Compellingly, lncRNA expression is strongly linked with adjacent protein-coding gene expression, suggesting a potential cis-regulatory function. Evidence for these regulatory roles may be obtained through careful examination of the precise timing of lncRNA expression relative to adjacent protein-coding genes. ResultsWhere causal cis-regulatory relationships exist, lncRNA activation is expected to precede changes in adjacent target gene expression. Using an RNA-seq time course of uniquely high temporal resolution, we profiled the expression dynamics of several thousand lncRNAs and protein-coding genes in synchronized, transitioning human cells. Our findings reveal lncRNAs are expressed synchronously with adjacent protein-coding genes. Analysis of lipopolysaccharide-activated mouse dendritic cells revealed the same temporal relationship observed in transitioning human cells. ConclusionOur findings suggest broad-scale cis-regulatory roles for lncRNAs are not common. The strong association between lncRNAs and adjacent genes may instead indicate an origin as transcriptional by-products from active protein-coding gene promoters and enhancers.

bioinformatics↗