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Skokan, R.

Publications and source records attributed to Skokan, R..

4 recordsLinked to original sources

Decarboxylation of indoleacetic acid illuminates its evolution into a plant hormone

The evolution of indoleacetic acid (IAA) into the plant hormone auxin remains unclear. Here, we compared IAA response and metabolism in land plants and their closest living relatives, the streptophyte algae, using chemical treatments, phytohormone profiling, and targeted and untargeted metabolomics. Streptophyte algae showed neither plant-like auxin responses nor canonical IAA metabolism. Here, we demonstrate IAA side-chain decarboxylation as a novel pathway of cellular IAA metabolism, operating in streptophyte algae and land plants alike. Decarboxylation also underpinned IAA's innate photolability and yielded cytotoxic intermediates, which also accumulated endogenously under simulated sunlight. Together, these findings establish IAA decarboxylation as a major, conserved metabolic pathway, and suggest that the metabolic constraints arising from IAA's instability and indirect cytotoxicity contributed to its adoption as a plant hormone.

plant biology↗

Evolutionary analysis of the exocyst complex in streptophytes links early EXO70 diversification with dominance over SEC3 in membrane targeting

The exocyst is a conserved octameric vesicle-tethering complex essential for targeted secretion. It is organized into two modules (I: SEC3, SEC5, SEC6, SEC8; II: SEC10, SEC15, EXO70, EXO84). In plants, the module II subunits SEC15, EXO84, and especially EXO70 have diversified into multiple subfamilies, yet the evolutionary origins and functional consequences of this diversification remain unclear. Here we reconstruct exocyst evolution across streptophytes using phylogenomic, functional complementation, and structural modeling analyses. We show that the three major EXO70 subfamilies originated in anydrophytes--the common ancestor of Zygnematophyceae and land plants--indicating that EXO70 diversification had begun at the dawn of plant terrestrialization. Complementation of Arabidopsis exo70 mutants with EXO70 paralogs from the liverwort Marchantia polymorpha and the streptophyte alga Klebsormidium nitens demonstrates that the ancestral canonical function is retained in the EXO70.1 lineage, whereas other subfamilies have undergone substantial functional specialization. We further uncover an evolutionary shift in exocyst membrane targeting: while Klebsormidium SEC3 retains autonomous membrane-recruitment capacity, land-plant SEC3 subunits have lost this ability, rendering exocyst targeting increasingly dependent on EXO70. Together, these findings suggest that early EXO70 diversification, combined with the redistribution of membrane-targeting functions within the exocyst, enabled paralog-specific exocyst recruitment and facilitated the emergence of specialized secretion pathways during plant terrestrialization. Significance StatementThe exocyst is a conserved protein complex that targets secretory vesicles to the plasma membrane across eukaryotes. In land plants, the EXO70 subunit diversified extensively, but the origins and consequences of this diversification remained unclear. We show that three major EXO70 subfamilies arose in the common ancestor of land plants and their closest algal relatives, at the dawn of plant terrestrialization. Cross-species complementation reveals that the EXO70.1 lineage retains the ancestral canonical function, whereas other subfamilies specialized. We further uncover an evolutionary shift in the mechanism of exocyst membrane targeting, from SEC3 toward EXO70, that could have enabled distinct EXO70 paralogs to direct secretion to different cellular sites during the colonization of land.

plant biology↗

Origin and evolution of Auxin Efflux Carrier family: PIN, PILS, GPR155 and the others

The resolution of the 3D structure of PIN proteins and the ability to universally predict protein structures using AlphaFold allowed us to reconsider the classification of Auxin efflux carriers within the BART superfamily, and we propose to merge members of this superfamily, possessing a characteristic fold with a helical crossover, with other families carrying this fold (BASS, NhaA, CPA and others) into a newly proposed superfamily named X-Helices Carriers (XHC). We further demonstrate a profound divergence between PIN and PILS proteins and monophyly of eukaryotic PINs with the animal cholesterol receptor GPR155/LYCHOS. We hypothesise that its signalling capacity is derived from a general feature of PIN proteins to interact with membrane lipids within the core membrane fold. Finally, we discuss the auxin-transport ability of PIN and PILS proteins in the context of the described properties of bacterial homologs that act as organic acid permeases. DisclaimerThis version is a draft and it will be updated during the next few weeks. HighlightsO_LIPINs are in plants and fragmentary in many algae and protists, but never in fungi C_LIO_LIEukaryotic PINs are monophyletic together with animal cholesterol receptor GPR155 C_LIO_LIPILS are frequently present in protists and in all fungi, but not in animals C_LIO_LIPINs/PILS split is occurred very early in Prokaryota C_LIO_LIAECs belongs to proposed superfamily of transporter with helical crossover C_LI

evolutionary biology↗

Phytohormone profiling in an evolutionary framework

Multiple phytohormones act as conserved developmental regulators in land plants. Although the closely related streptophyte green algae typically lack full complements of molecular pathways underlying these responses, scattered reports of endogenous phytohormone production in these organisms exist. In this study, we performed a detailed LC/MS-based analysis of several phytohormones, their precursors and metabolites in all lineages of streptophyte algae. We also included chlorophyte algae and early-diverging land plants as outgroups. Free auxin, tRNA-derived cytokinins and certain phenolics including salicylic acid were found ubiquitously. However, land plants differed from green algae by the consistent detection of abscisic acid and the presence of auxin and cytokinin conjugates and trans-zeatin, supporting the hypotheses that these three phytohormones likely came to regulate development in the ancestral land plant. By contrast, we observed a patchy distribution of jasmonates among streptophytes. We additionaly analyzed the corresponding culture and empty media to account for phytohormone excretion and environmental contamination. Extracellular auxins and cytokinins were frequently detected, while agar constituted a major external source of phenolic compounds. We provide a highly comprehensive evolution-directed screen of phytohormone compound occurrence and thoroughly discuss our data in the context of current plant hormonomics and phylogenomics. GRAPHICAL ABSTRACT O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=143 SRC="FIGDIR/small/534998v1_ufig1.gif" ALT="Figure 1"> View larger version (52K): org.highwire.dtl.DTLVardef@1532f4org.highwire.dtl.DTLVardef@1c4396borg.highwire.dtl.DTLVardef@195d0eborg.highwire.dtl.DTLVardef@c71b11_HPS_FORMAT_FIGEXP M_FIG C_FIG

plant biology↗