Biology subjects

Sinkin, M.

Publications and source records attributed to Sinkin, M..

3 recordsLinked to original sources

bioRxiv2025

Qualitative and Quantitative Comparative Analysis of Common Normal Variants and Physiological Artifacts in MEG and EEG

AbstractMagnetoencephalography (MEG) and electroencephalography (EEG) provide complementary insights into brain activity, yet their distinct biophysical principles influence how normal neurophysiological patterns and artifacts are represented. This study presents a comprehensive qualitative and quantitative analysis of common physiological variants and artifacts in simultaneously recorded MEG and EEG data. We systematically examined patterns such as alpha spindles, sensorimotor rhythms, sleep-related waveforms (vertex waves, K-complexes, sleep spindles, and posterior slow waves of youth), as well as common artifacts including eye blinks, chewing, and movement-related interferences. By applying time-domain, time-frequency, and source- space analyses, we identified modality-specific differences in signal representation, source localization, and artifact susceptibility. Our results demonstrate that MEG provides a more spatially focal representation of physiological patterns, whereas EEG captures broader, radially oriented cortical activity. Mutual information analysis indicated that MEG-derived independent components exhibited greater topographical variability and higher information content for neurophysiological activity, while EEG components were more homogeneous. Signal-to-noise ratio (SNR) analysis confirmed that MEG gradiometers capture the highest total information, followed by magnetometers and then EEG. Notably, physiological signals such as vertex waves and K-complexes exhibited significantly higher total information in MEG, whereas EEG was more sensitive to high-amplitude artifacts, including swallowing and muscle activity. These findings highlight the distinct strengths and limitations of MEG and EEG, reinforcing the necessity of multimodal approaches in clinical and research applications to improve the accuracy of neurophysiological assessments.

neuroscience↗

bioRxiv2022

Speech decoding from a small set of spatially segregated minimally invasive intracranial EEG electrodes with a compact and interpretable neural network

AO_SCPLOWBSTRACTC_SCPLOWO_ST_ABSBackgroundC_ST_ABSSpeech decoding, one of the most intriguing BCI applications, opens up plentiful opportunities from rehabilitation of patients to direct and seamless communication between human species. Typical solutions rely on invasive recordings with a large number of distributed electrodes implanted through craniotomy. Here we explored the possibility of creating speech prosthesis in a minimally invasive setting with a small number of spatially segregated intracranial electrodes. MethodsWe collected one hour of data (from two sessions) in two patients implanted with invasive electrodes. We then used only the contacts that pertained to a single sEEG shaft or an ECoG stripe to decode neural activity into 26 words and one silence class. We employed a compact convolutional network-based architecture whose spatial and temporal filter weights allow for a physiologically plausible interpretation. ResultsWe achieved on average 55% accuracy using only 6 channels of data recorded with a single minimally invasive sEEG electrode in the first patient and 70% accuracy using only 8 channels of data recorded for a single ECoG strip in the second patient in classifying 26+1 overtly pronounced words. Our compact architecture did not require the use of pre-engineered features, learned fast and resulted in a stable, interpretable and physiologically meaningful decision rule successfully operating over a contiguous dataset collected during a different time interval than that used for training. Spatial characteristics of the pivotal neuronal populations corroborate with active and passive speech mapping results and exhibit the inverse space-frequency relationship characteristic of neural activity. Compared to other architectures our compact solution performed on par or better than those recently featured in neural speech decoding literature. ConclusionsWe showcase the possibility of building a speech prosthesis with a small number of electrodes and based on a compact feature engineering free decoder derived from a small amount of training data.

neuroscience↗

bioRxiv2022

Fast parametric curve matching (FPCM) for automatic spike detection

Epilepsy is a widely spread neurological disease, whose treatment often requires resection of the pathological cortical tissue. Interictal spike analysis observed in the non-invasively collected EEG or MEG data offers an attractive way to localize epileptogenic cortical structures for surgery planning purposes. Interictal spike detection in lengthy multichannel data is a daunting task that is still often performed manually. This frequently limits such an analysis to a small portion of the data which renders the appropriate risks of missing the potentially epileptogenic region. While a plethora of automatic spike detection techniques have been developed each with its own assumptions and limitations, non of them is ideal and the best results are achieved when the output of several automatic spike detectors are combined. This is especially true in the low signal-to-noise ratio conditions. To this end we propose a novel biomimetic approach for automatic spike detection based on a constrained mixed spline machinery that we dub as fast parametric curve matching (FPCM). Using the peak-wave shape parametrization, the constrained parametric morphological model is constructed and convolved with the observed multichannel data to efficiently determine mixed spline parameters corresponding to each time-point in the dataset. Then the logical predicates that directly map to verbalized text-book like descriptions of the expected interictal event morphology allow us to accomplish the spike detection task. The results of simulations mimicking typical low SNR scenario show the robustness and high ROC AUC values of the FPCM method as compared to the spike detection performed using more conventional approaches such as wavelet decomposition, template matching or simple amplitude thresholding. Applied to the real MEG and EEG data from the human patients and to rat ECoG data, the FPCM technique demonstrates reliable detection of the interictal events and localization of epileptogenic zones concordant with independent conclusions made by the epileptologist. Since the FPCM is computationally light, tolerant to high amplitude artifacts and flexible to accommodate verbalized descriptions of the arbitrary target morphology, it may complement the existing arsenal of means for analysis of noisy interictal datasets.

neuroscience↗