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Siebenhuhner, F.

Publications and source records attributed to Siebenhuhner, F..

6 recordsLinked to original sources

CROCOpy - A Python toolbox for the analysis of CRitical Oscillations and COnnectivity

CROCOpy is a light-weighted toolbox for the assessment of neuronal oscillations, and multiple observables of functional connectivity (phase synchronization, amplitude coupling, and cross-frequency coupling) and critical dynamics (avalanches, long-range temporal correlations, bistability, and functional excitation-inhibition ratio). It was developed to simplify the analysis of continuous electrophysiological recordings and, in addition to metric computation, also includes methods for narrow-band filtering and statistical analysis. It is device-agnostic and supports both GPU and CPU computations. The toolbox also provides detailed tutorials.

neuroscience↗

Altered Brain Dynamics in idiopathic REM sleep behavior disorder: Implications for a continuum from prodromal to overt alpha-synucleinopathies

Idiopathic/isolated REM sleep behavior disorder (iRBD) is considered a prodromal stage of alpha-synucleinopathies. Cortical and sub-cortical brain modifications begin years before the emergence of overt neurodegenerative symptoms. To better understand the pathophysiological process impacting the brain from the prodromal to the overt stage of alpha-synucleinopathy, it is essential to assess iRBD patients over time. Recent evidence suggests that the human brain operates at an operating point near a critical phase transition between subcritical and supercritical phases in the systems state space to maintain cognitive and physiological performance. In contrast, a deviation from the critical regime leading to altered oscillatory dynamics has been observed in several pathologies. Here, we investigated if the alpha-synucleinopathy produces a deviation of the operating point already evident in the prodromal phase and if this shift correlates with biological and clinical disease severity. We analyzed a dataset of 59 patients with iRBD (age 69.61 {+/-} 6.98, 50 male) undergoing resting-state high-density EEG, presynaptic dopaminergic imaging, and clinical evaluations. Thirty-one patients (age 72.41 {+/-} 7.05, 31 male) also underwent clinical and instrumental follow-up (mean follow-up period 25.85 {+/-} 10.20 months). To localize the individual operating points along the excitation-inhibition (EI) continuum, we assessed both measures of neuronal EI balance and measures of critical brain dynamics such as long-range temporal correlation (LRTCs) and neuronal bistability in spontaneous narrow-band oscillations. Finally, we correlated critical brain dynamics and EI balance metrics with phase synchronization, nigro-striatal dopaminergic functioning, and clinical performances. Compared to 48 healthy subjects (age 70.25 {+/-} 10.15, 23 male), iRBD patients showed higher values of LRTCs and bistability in the 2-7 Hz band at diagnosis. Patients who eventually phenoconverted to overt alpha-synucleinopathy exhibited a more excitation-dominated (fEI > 1) condition than stable iRBD patients in 5-7 Hz. This higher excitation also directly correlated with phase synchronization in 2-7 Hz, further suggesting a shift of the operating point toward a supercritical state with the disease progression. Moreover, excitation-dominated state and low bistability were associated with deterioration of the nigro-striatal dopaminergic function and tended to correlate with stronger clinical symptoms. In conclusion, this study shows for the first time a deviation of the working point from inhibition-to excitation-dominated states along the continuum from prodromal to overt phases of the disease. These cortical brain dynamics modifications are associated with nigro-striatal dopaminergic impairment. These results increase our knowledge of the physiopathological process underlying alpha-synucleinopathies since prodromal stages, possibly providing new clues on disease-modifying strategies.

bioengineering↗

The influence of inter-regional delays in generating large-scale brain networks of phase synchronization

Large-scale networks of phase synchronization are considered to regulate the communication between brain regions fundamental to cognitive function, but the mapping to their structural substrates, i.e., the structure-function relationship, remains poorly understood. Biophysical Network Models (BNMs) have demonstrated the influences of local oscillatory activity and inter-regional anatomical connections in generating alpha-band (8-12 Hz) networks of phase synchronization observed with Electroencephalography (EEG) and Magnetoencephalography (MEG). Yet, the influence of inter-regional conduction delays remains unknown. In this study, we compared a BNM with standard "distance-dependent delays", which assumes constant conduction velocity, to BNMs with delays specified by two alternative methods accounting for spatially varying conduction velocities, "isochronous delays" and "mixed delays". We followed the Approximate Bayesian Computation (ABC) workflow, i) specifying neurophysiologically informed prior distributions of BNM parameters, ii) verifying the suitability of the prior distributions with Prior Predictive Checks, iii) fitting each of the three BNMs to alpha-band MEG resting-state data (N = 75) with Bayesian Optimisation for Likelihood-Free Inference (BOLFI), and iv) choosing between the fitted BNMs with ABC model comparison on a separate MEG dataset (N = 30). Prior Predictive Checks revealed the range of dynamics generated by each of the BNMs to encompass those seen in the MEG data, suggesting the suitability of the prior distributions. Fitting the models to MEG data yielded reliable posterior distributions of the parameters of each of the BNMs. Finally, model comparison revealed the BNM with "distance-dependent delays", as the most probable to describe the generation of alpha-band networks of phase synchronization seen in MEG. These findings suggest that distance-dependent delays contribute significantly to the neocortical architecture of human alpha-band networks of phase synchronization. Hence, our study illuminates the role of inter-regional delays in generating the large-scale networks of phase synchronization that might subserve the communication between regions vital to cognition. HighlightsO_LICompared methods to specify delays in Biophysical Network Models (BNMs) C_LIO_LIBNM with "distance-dependent" conduction delays more probable than alternatives C_LIO_LIBNMs with biologically informed prior distributions generate dynamics seen in MEG C_LIO_LIFitting BNMs yields reliable posterior distributions informed by MEG data (N = 75) C_LI

neuroscience↗

Brain criticality predicts individual synchronization levels in humans

Moderate levels of synchronization of neuronal oscillations are essential for healthy brain dynamics. Synchronization levels exhibit large inter-individual variability the origins of which are unknown. Neuronal systems have been postulated to operate near a critical transition point or in an extended regime between disorder (subcritical) and order (supercritical phase) characterized by moderate synchronization and emergent power-law long-range temporal correlations (LRTCs). We investigated whether inter-individual variability in synchronization levels is explained by the individual position along the critical regime by analyzing magnetoencephalography (MEG) and intra-cerebral stereo-electroencephalography (SEEG) human resting-state data. Here we show that variability in synchronization levels exhibits a positive linear and quadratic relationships with LRTCs in healthy participants and brain areas. In the epileptogenic zone this correlation was negative. These results show that variability in synchronization levels is regulated by the individual position along an extended critical-like regime, with healthy brain areas tending to operate in its subcritical and epileptogenic areas in its supercritical side.

neuroscience↗

Biophysical network models of phase-synchronization in MEG resting-state

Magnetoencephalography (MEG) is used extensively to study functional connectivity (FC) networks of phase-synchronization, but the relationship of these networks to their biophysical substrates is poorly understood. Biophysical Network Models (BNMs) have been used to produce networks corresponding to MEG-derived networks of phase-synchronization, but the roles of inter-regional conduction delays, the structural connectome and dynamics of model of individual brain regions, in obtaining this correspondence remain unknown. In this study, we investigated the roles of conduction delays, the structural connectome, and dynamics of models of individual regions, in obtaining a correspondence between model-generated and MEG-derived networks between left-hemispheric regions. To do this, we compared three BNMs, respectively comprising Wilson-Cowan oscillators interacting with diffusion Magnetic Resonance Imaging (MRI)-based patterns of structural connections through zero delays, constant delays and distance-dependent delays respectively. For the BNM whose networks corresponded most closely to the MEG-derived network, we used comparisons against null models to identify specific features of each model component, e.g. the pattern of connections in the structure connectome, that contributed to the observed correspondence. The Wilson-Cowan zero delays model produced networks with a closer correspondence to the MEG-derived network than those produced by the constant delays model, and the same as those produced by the distance-dependent delays model. Hence, there is no evidence that including conduction delays improves the correspondence between model-generated and MEG-derived networks. Given this, we chose the Wilson-Cowan zero delays model for further investigation. Comparing the Wilson-Cowan zero delays model against null models revealed that both the pattern of structural connections and Wilson-Cowan oscillatory dynamics contribute to the correspondence between model-generated and MEG-derived networks. Our investigations yield insight into the roles of conduction delays, the structural connectome and dynamics of models of individual brain regions, in obtaining a correspondence between model-generated and MEG-derived networks. These findings result in a parsimonious BNM that produces networks corresponding closely to MEG-derived networks of phase-synchronization. HighlightsO_LISimple biophysical model produces close match ({rho}=0.49) between model and MEG networks C_LIO_LINo evidence for conduction delays improving match between model and MEG networks C_LIO_LIPattern of structural connections contributes to match between model and MEG networks C_LIO_LIWilson-Cowan oscillatory dynamics contribute to match between model and MEG networks C_LI

neuroscience↗

Hyperedge bundling: A practical solution to spurious interactions in MEG/EEG source connectivity analyses

Inter-areal functional connectivity (FC), neuronal synchronization in particular, is thought to constitute a key systems-level mechanism for coordination of neuronal processing and communication between brain regions. Evidence to support this hypothesis has been gained largely using invasive electrophysiological approaches. In humans, neuronal activity can be non-invasively recorded only with magneto- and electroencephalography (MEG/EEG), which have been used to assess FC networks with high temporal resolution and whole-scalp coverage. However, even in source-reconstructed MEG/EEG data, signal mixing, or \"source leakage\", is a significant confounder for FC analyses and network localization.\n\nSignal mixing leads to two distinct kinds of false-positive observations: artificial interactions (AI) caused directly by mixing and spurious interactions (SI) arising indirectly from the spread of signals from true interacting sources to nearby false loci. To date, several interaction metrics have been developed to solve the AI problem, but the SI problem has remained largely intractable in MEG/EEG all-to-all source connectivity studies. Here, we advance a novel approach for correcting SIs in FC analyses using source-reconstructed MEG/EEG data.\n\nOur approach is to bundle observed FC connections into hyperedges by their adjacency in signal mixing. Using realistic simulations, we show here that bundling yields hyperedges with good separability of true positives and little loss in the true positive rate. Hyperedge bundling thus significantly decreases graph noise by minimizing the false-positive to true-positive ratio. Finally, we demonstrate the advantage of edge bundling in the visualization of large-scale cortical networks with real MEG data. We propose that hypergraphs yielded by bundling represent well the set of true cortical interactions that are detectable and dissociable in MEG/EEG connectivity analysis.\n\nHighlightsO_LIA true interaction often is \"ghosted\" into a multitude of spurious edges (SI)\nC_LIO_LIEffective in controlling and illustrating SI\nC_LIO_LIHyperedges have much improved TPR and graph quality\nC_LIO_LIAdvantages in visualizing connectivity\nC_LI

neuroscience↗