Biology subjects

Shreenidhi, P. M.

Publications and source records attributed to Shreenidhi, P. M..

5 recordsLinked to original sources

bioRxiv2024

Prey attraction in a generalist microbial predator, Dictyostelium discoideum

How do generalists adjust to variation in prey abundance and profitability and seek out their preferred prey? We investigated this question in the soil protist Dictyostelium discoideum, a generalist predator of many species of bacteria. Despite their generalist diet, amoebas proliferate more quickly on some bacteria than on others. We tested amoeba chemoattraction towards 23 bacterial species and found that they are generally more attracted to the more profitable prey bacteria. Naive amoebas were also preferentially more attracted to an edible mutant rather than the inedible wild type of a soil Pseudomonas isolate. These results suggest that D. discoideum amoebas have an innate prey preference that is adaptive. We also tested how experience with different prey bacteria affects chemoattraction in amoebas. Given the huge number of bacterial species in soil, learning from experience should be advantageous. However, we found no evidence that experience with prey bacteria affects preference. Our results suggest that generalist amoebas are innately attracted to the more profitable prey bacteria and this innate attraction cannot be overridden by recent experience.

evolutionary biology↗

bioRxiv2023

Predation-resistant Pseudomonas bacteria engage in symbiont-like behavior with the social amoeba Dictyostelium discoideum

The soil amoeba Dictyostelium discoideum acts as both a predator and potential host for diverse bacteria. We tested fifteen Pseudomonas strains that were isolated from transiently infected wild D. discoideum for ability to escape predation and infect D. discoideum fruiting bodies. Three predation-resistant strains frequently caused extracellular infections of fruiting bodies but were not found within spores. Furthermore, infection by one of these species induces secondary infections and suppresses predation of otherwise edible bacteria. Another strain can persist inside of amoebae after being phagocytosed but is rarely ingested. We sequenced isolate genomes and discovered that predation-resistant isolates are not monophyletic. Many Pseudomonas isolates encode secretion systems and toxins known to improve resistance to phagocytosis in other species, as well as diverse secondary metabolite biosynthetic gene clusters that may contribute to predation resistance. However, the distribution of these genes alone cannot explain why some strains are edible and others are not. Each lineage may employ a unique mechanism for resistance.

microbiology↗

bioRxiv2023

Costs of being a diet generalist in the super-generalist protist predator Dictyostelium discoideum

Consumers lie on a continuum between diet specialization on few resources to being generalist feeders on many resources. Generalism has the clear advantage of having more resources to exploit, but the costs that limit generalism are less clear. We explore two understudied costs of generalism in a super-generalist amoeba predator, Dictyostelium discoideum, feeding on naturally co-occurring bacterial prey. Both involve costs of combining different prey. First, amoebas exhibit a reduction in growth rate when they switch from one species of prey bacteria to another, something we call resource-switching costs. These switching costs typically disappear within a day, indicating adjustment to new prey bacteria. Second, amoebas usually divide more slowly on mixtures of bacteria compared to on single bacteria, something we call resource-mixing costs. Both results support that idea that, although amoebas can consume a huge variety of prey, they must use partially different methods and thus must pay costs to handle multiple prey, either sequentially or simultaneously. Significance StatementPerhaps the most fundamental conflict in nature occurs when one organism consumes another. Diet generalists benefit from the advantage of eating many prey but then must deal with many prey defences. We explore costs associated with a broad diet in a protist microbial predator, Dictyostelium discoideum. These predators of bacteria show a delay in growth when switched from one bacteria to another, supporting the hypothesis that they must deploy different strategies. They also experience costs when grown on many bacteria at once, suggesting that the alternative strategies for consuming different prey are partly incompatible with each other. Our findings shed light on the nature of diet generalism and highlight the complexity of predation in the microbial world.

ecology↗

bioRxiv2021

Desiccation stress acts as cause as well as cost of dispersal in Drosophila melanogaster

O_LIEnvironmental stress is one of the important causes of biological dispersal. At the same time, the process of dispersal itself can incur and/or increase susceptibility to stress for the dispersing individuals. Therefore, in principle, stress can serve as both a cause and a cost of dispersal. C_LIO_LIDesiccation stress is an environmentally relevant stress faced by many organisms, known to shape their population dynamics and distribution. However, the potentially contrasting roles of desiccation stress as a cause and a cost of dispersal have not been investigated. Furthermore, while desiccation stress often affects organisms in a sex-biased manner, it is not known whether the desiccation-dispersal relationship varies between males and females. C_LIO_LIWe studied the role of desiccation stress as a cause and cost of dispersal in a series of experiments using D. melanogaster adults in two-patch dispersal setups. We were interested in knowing whether (a) dispersers are the individuals that are more susceptible to desiccation stress, (b) dispersers pay a cost in terms of reduced resistance to desiccation stress, (c) dispersal evolution alters the desiccation cost of dispersal, and (d) females pay a reproductive cost of dispersal. For this, we modulated the degree of desiccation stress faced by the flies as well as the provision of rest following a dispersal event. C_LIO_LIOur data showed that desiccation stress served as a significant cause of dispersal in both sexes. Further investigation revealed an increase in both male and female dispersal propensity with increasing desiccation duration. Next, we found a male-biased cost of dispersal in terms of reduced desiccation resistance. This trend was preserved in dispersal-selected and non-selected controls as well, where the desiccation cost of dispersal in females was very low compared to the males. Finally, we found that the females instead paid a significant reproductive cost of dispersal. C_LIO_LIOur results highlight the complex relationship between desiccation stress and dispersal, whereby desiccation resistance can show both a positive and a negative association with dispersal. Furthermore, the sex differences observed in these trait associations may translate into differences in movement patterns, thereby giving rise to sex-biased dispersal. C_LI

ecology↗

bioRxiv2017

Evolution of dispersal syndrome and its corresponding metabolomic changes

Dispersal is one of the strategies for organisms to deal with climate change and habitat degradation. Therefore, investigating the effects of dispersal evolution on natural populations is of considerable interest to ecologists and conservation biologists. Although it is known that dispersal itself can evolve due to selection, the behavioral, life-history and metabolic consequences of dispersal evolution are not well understood. Here we explore these issues by subjecting four outbred laboratory populations of Drosophila melanogaster to selection for increased dispersal. The dispersal-selected populations had similar values of body size, fecundity and longevity as the non-selected lines (controls), but evolved significantly greater locomotor activity, exploratory tendency, and aggression. Untargeted metabolomic fingerprinting through NMR spectroscopy suggested that the selected flies evolved elevated cellular respiration characterized by greater amounts of glucose, AMP and NAD. Concurrent evolution of higher level of Octopamine and other neurotransmitters indicate a possible mechanism for the behavioural changes in the selected lines. We discuss the generalizability of our findings in the context of observations from natural populations. To the best of our knowledge, this is the first report of the evolution of metabolome due to selection for dispersal and its connection to dispersal syndrome evolution.

evolutionary biology↗