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Shima, N.

Publications and source records attributed to Shima, N..

3 recordsLinked to original sources

Reversible inhibition of viral life cycle in response to elevated temperature in a bloom-forming alga

Ocean warming is expected to reshape microbial interactions and community composition, with profound consequences for marine biogeochemical cycles. Host-virus dynamics are central to these processes, yet their response to elevated temperature remains poorly understood. Here, using the bloom-forming alga Gephyrocapsa huxleyi and its specific large dsDNA virus, Emiliania huxleyi virus (EhV), we show that elevated temperature withheld virion production and abolished distinct stages of the viral life cycle. Viral adsorption and early transcription remained active, whereas viral DNA replication and late gene expression were arrested, leading to an intracellular inhibition of infection. Intriguingly, this arrested infection state was reversible following prolonged heatwave conditions. Single-cell analyses revealed that reversibility of infection inhibition occurred both within a small fraction of infected cells and by reinfection by extracellular virions that remained viable during heat exposure in the extracellular milieu. Furthermore, we detected variability in infection inhibition by temperature across several host-virus pairs, suggesting that the effect of temperature is strain-specific. Our findings uncover a temperature-sensitive checkpoint in the viral life cycle, providing a mechanistic framework for understanding how marine heatwaves may reshape virus-driven mortality and carbon cycling in the ocean.

microbiology↗

The Unexpected Match: STAT3-NORAD Interaction, a Novel Link in Antiviral Defense

In the intricate biological landscape, evolution often repurposes familiar elements for novel roles. This study reveals an interaction between the long non-coding RNA NORAD, noted for its role in DNA stability, and the immune-related transcription factor STAT3. Our findings indicate that NORADs binding to STAT3 facilitates its nuclear entry, suppressing the antiviral response. In the absence of NORAD, STAT3 remains cytoplasmic, enabling STAT1 to activate this response. Evidence from viral infections and clinical samples reinforces this unique role for NORAD. Intriguingly, while other functions of NORAD are conserved in evolution, this newly discovered role is unique to humans, owing to the introduction of an ALU element in hominoids. This discovery sheds new light on the evolution of antiviral defenses.

molecular biology↗

PCNA-K164 ubiquitination facilitates origin licensing and mitotic DNA synthesis

Ubiquitination of the replication clamp proliferating cell nuclear antigen (PCNA) at the conserved residue lysine 164 (K164) occurs during normal S phase progression and increases after DNA damage induced replication stress. PCNA-K164 ubiquitination is critical for Okazaki fragment maturation and the activation of DNA damage tolerance pathways. Moreover, ubiquitinated PCNA operates in a fork protection pathway parallel to BRCA-RAD51. Whether PCNA ubiquitination regulates other genome maintenance mechanisms is unclear. Utilizing PCNAK164R cells generated by CRISPR-Cas9, we demonstrate that this mutation causes DNA replication defects that impact origin activation. PCNAK164R cells accumulate single-stranded DNA gaps during replication that persist throughout mitosis due to compromised mitotic DNA synthesis (MiDAS). We uncover a novel role for PCNA-K164 ubiquitination in regulating FANCD2 to initiate MiDAS. Persistent gaps hence interfere with MCM2-7 double hexamer loading in the subsequent G1 phase. Our findings demonstrate that the impact of PCNAK164-Ub is not limited to S/G2 phases but extends to mitosis and G1 phase. SUMMARYPCNA-K164 ubiquitination promotes DNA gap filling during S/G2 phases of the cell cycle. This study identifies a novel role for K164 ubiquitination in replication dynamics and mitotic DNA synthesis and thus provides new insight into the players involved in counteracting under-replication.

molecular biology↗