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Shikha, S.

Publications and source records attributed to Shikha, S..

2 recordsLinked to original sources

Proteome-wide crosslinking mass spectrometry reveals novel components of essential complexes in Toxoplasma

Protein-protein interactions underpin nearly all cellular processes, yet systematic definition of these networks remains limited outside a few model organisms. As a result, the architectures of essential complexes in many divergent lineages remain poorly characterized. Here we developed a high-coverage crosslinking mass spectrometry framework to map the proteome-wide interactome of the model apicomplexan parasite Toxoplasma gondii. From 29,624 crosslinked peptide pairs, we resolved a network of 2,859 protein-protein interactions that we integrated with structural modeling to resolve interaction interfaces. We identified and validated previously unrecognized components of essential protein complexes, including a structurally distinct ATP synthase subcomplex containing a highly divergent, apicomplexan-specific subunit essential for parasite fitness. Beyond revealing unexpected diversification of core mitochondrial machinery, these findings provide a general strategy to define the molecular architecture of divergent organisms and represent a foundational resource for hypothesis generation, structural inference, and discovery of lineage-specific vulnerabilities in pathogen biology.

microbiology↗

Global translational and metabolic remodelling during iron deprivation in Toxoplasma gondii

Iron is required to support essential cellular processes. Due to diverse and dynamic host environments, the obligate intracellular parasite Toxoplasma gondii must adapt to iron limited conditions. To investigate the adaptations critical to parasite survival under these conditions, we conducted proteomic and metabolomic profiling of Toxoplasma cultured in iron depleted conditions. We find that iron depletion results in remodelling of the parasite proteome and triggers swift translational repression. This occurs prior to downregulation of the iron-regulated translation factor ABCE1, indicating an upstream, ABCE1-independent mechanism. In the context of repressed translation, we also observe a significant rewiring of energy metabolism. Iron depleted Toxoplasma have altered mitochondrial morphology and a profound reduction in mitochondrial respiration. Untargeted metabolomic analysis revealed tricarboxylic acid cycle (TCA) cycle dysregulation, characterised by accumulation of citrate and fumarate, both substrates of iron-dependent TCA cycle enzymes, and accumulation of glycolytic intermediates. We found iron deprived parasites continue to take up glucose and maintain glycolytic output, comparable to iron replete conditions. Limiting glucose availability either in culture media or by genetic ablation of glucose uptake caused a significant increase in sensitivity to iron restriction. Conversely, limitation of mitochondrially metabolised glutamine improved parasite fitness in iron depleted conditions. Together, our results establish iron as a key regulator of parasite translation and metabolic flexibility and demonstrate carbon source availability as important in Toxoplasma adaptation to iron deprivation. ImportanceThis study determines the effects of iron deprivation on the parasite Toxoplasma gondii. Using proteomics and metabolomics, we reveal iron as a novel regulator of both translation and energy metabolism in Toxoplasma, underpinning the importance of this nutrient for essential cellular processes. We find that iron depletion introduces a metabolic bottleneck whereby parasites are dependent on glucose as their major carbon source. By modulating the parasites metabolism by altering carbon source availability, we identify nutrient conditions that improve parasite survival under iron restriction. These data reveal a key role for adaptive plasticity of Toxoplasma central carbon metabolism to drive survival under iron limited conditions. Understanding the interactions between parasite nutrient availability and metabolism allows us both to map the metabolic flexibility of these parasites, and to identify potential vulnerabilities.

microbiology↗