Sherwin, W. | bioRxiv Science

bioRxiv2020

Are there Physical Linkages between Genes that have Synergistic Fitness Effects?

Many of the effects on fitness in population genetics are due not to single locations in the genome, but to the interaction of genetic variants at multiple locations in the genome. Of particular interest are completely epistatic interactions, where a combination of genetic variants is required to produce an effect, and the effect cannot occur with any other combination. In diploids, epistasis is strongly connected to meiotic recombination, a process which can both assemble and destroy beneficial combinations of genetic variants. Additionally, epistatic interactions can be hard to detect in empirical studies, and mathematical models of epistasis and recombination are challenging to analyse, so despite their ubiquity epistatic interactions are regularly not considered. As a result, there is little consensus on when high levels of recombination might be expected, or how strongly recombination affects beneficial or deleterious fitness effects controlled by epistatic interactions. We address this question by conducting a meta-analysis and simulations. The meta-analysis used data drawn and curated from Drosophila melanogaster studies in Flybase. We extracted studies relating genetic combinations and phenotypically detectable effects on fitness, then analysed the relationship between the rate of recombination and effect on fitness with a statistical model. We also ran simulations under a two-locus Wright-Fisher model with recombination and epistatic selection. The results of both approaches indicated a tendency for genetic combinations with an epistatic effect on fitness to occur in an environment of reduced meiotic recombination. Two possible explanations for this are that the variants controlling such interactions are selected for in regions where there is little recombination, or that such interactions lead to selection for lower rates of recombination in the regions where those variants appear.

evolutionary biology↗

bioRxiv2019

Local signatures of founding populations confound examination of adaptive divergence in invasive populations

A detailed understanding of population genetics in invasive populations helps us to identify drivers of successful introductions. Here, we investigate putative signals of selection in Australian populations of invasive common starlings, Sturnus vulgaris, and seek to understand how these have been influenced by introduction history. We use reduced representation sequencing to determine population structure, and identity Single Nucleotide Polymorphisms (SNPs) that are putatively under selection. We found that since their introduction into Australia, starling populations have become genetically differentiated despite the potential for high levels of dispersal, and that selection has facilitated their adaptation to the wide range of environmental conditions across their geographic range. Isolation by distance appears to have played a strong role in determining genetic substructure across the starlings Australian range. Analyses of candidate SNPs that are putatively under selection indicate that aridity, precipitation, and temperature may be important factors driving adaptive variation across the starlings invasive range in Australia. However, we also note that the historic introduction regime may leave footprints on sites flagged as being under adaptive selection, and encourage critical interpretation of selection analyses.

evolutionary biology↗