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Biology subjects

Sheam, M. M.

Publications and source records attributed to Sheam, M. M..

3 recordsLinked to original sources

The biogeography of hydrothermal vent giant viruses across the global ocean

Viruses are the most abundant known biological entities in the ocean and play central role in microbial ecology. However, the patterns and drivers of their biogeographic distribution across global ocean remain poorly understood. Here, we conducted large-scale metagenomic analysis of 514 samples from globally-distributed hydrothermal vents and the pelagic ocean to examine the biogeography of giant viruses, a widespread viral group in the ocean. We identified 279 putative giant virus populations from hydrothermal vents and 56 populations were broadly distributed across hydrothermal vents. Vent-derived giant viruses are also present in the global pelagic ocean showing an "everything is everywhere" biogeographic pattern. We identified the mechanistic processes governing this global distribution of giant viruses and found that horizontal passive transport, mediated by hydrothermal plumes, is likely a major mechanism that drives the global connectivity of vent-derived giant viruses. Additionally, environmental selection appears to shape viral distributions within high-temperature vent habitats, as giant viruses encoding heat-shock proteins were enriched in these environments. Overall, this study identified the key process that sustain global-scale ecological connectivity for viruses between hydrothermal vents and pelagic ocean and demonstrates that a classic microbial biogeography paradigm, "everything is everywhere, but the environment selects" applies to marine giant viruses.

ecology↗

Isolation and characterization of two bacterial strains from textile effluents having Malachite Green dye degradation ability

Water pollution from textile effluent is now one of the major issues all over the world. Malachite Green dye of the triphenylmethane group is a key component of textile effluents. This study aimed to isolate and identify potential Malachite Green dye degrading bacteria from textile effluents. Different growth and culture parameters such as temperature, pH, inoculum-size and dye concentration were optimized to perform the dye-degradation assay using different concentrations of Malachite Green dye in mineral salt medium. A photo-electric-colorimeter was used to measure the decolorizing activity of bacteria at different time intervals after aerobic incubation. Two competent bacterial strains of Enterobacter spp. (CV-S1 and CM-S1) were isolated from textile effluents showing potential degradation efficiency against Malachite Green dye. The RAPD analysis and 16S rRNA sequencing confirmed the genetical difference of the isolated strains Enterobacter sp. CV-S1 and Enterobacter sp. CM-S1. The two bacterial strains CV-S1 and CM-S1 showed complete Malachite Green dye degradation up to 15 mg/l under shaking condition with 5% (v/v) inoculums at pH 6.50 and temperature 35{degrees}C within 72 and 144 hours respectively. These findings indicate that the two potential bacterial strains can be used in large scale treatment of textile effluents in the future.

microbiology↗

Immunoinformatic and dynamic simulation-based designing of a multi-epitope vaccine against emerging pathogen Elizabethkingia anophelis

Elizabethkingia anophelis is an emerging human pathogen causing neonatal meningitis, catheter-associated infections and nosocomial outbreaks with high mortality rates. Besides, they are resistant to most antibiotics used in empirical therapy. In this study, therefore, we used immunoinformatic approaches to design an epitope-based vaccine against E. anophelis as an alternative preventive measure. Initially, T-cell (CTL and HTL) and B-cell (LBL) epitopes were predicted from the highest antigenic protein. The CTL and HTL epitopes together had a population coverage of 99.97% around the world. Eventually, 6 CTL, 7 HTL, and 2 LBL epitopes were selected and used to construct a multiepitope vaccine. The vaccine protein was found to be highly immunogenic, non-allergenic, and non-toxic. Codon adaptation and in silico cloning were performed to ensure better expression within E. coli K12 host system. The stability of the vaccine structure was also improved by disulphide bridging. In addition, molecular docking and dynamic simulation revealed good and stable binding affinity between the vaccine and receptor. The immune simulation showed higher levels of T-cell and B-cell activities which was in coherence with actual immune response. Repeated exposure simulation resulted in higher clonal selection and faster antigen clearance. Nevertheless, experimental validation is required to ensure the immunogenic potency and safety of this vaccine to control E. anophelis infection in the future.

bioinformatics↗