Biology subjects

Shea, K.

Publications and source records attributed to Shea, K..

6 recordsLinked to original sources

bioRxiv2026

Disturbance regime changes leave long-lasting legacies on a microbial community's composition and function

Mortality-inducing disturbances are important, ubiquitous drivers of community composition and function. Importantly, human activities and climate change are increasingly altering disturbance regimes. Most disturbance studies focus on the effects of current disturbance regimes, rarely considering those of historical regimes. However, recent theoretical work predicts that historical regimes can leave persistent legacies, modulating the communitys response to novel disturbances and invasive species. Here, we complement this theoretical approach using a model bacterial system that experienced disturbance regimes for [~]120 generations, followed by novel regimes and invasions for another [~]120 generations. Our results show persistent effects of historical legacies on disturbance-diversity relationships. Furthermore, some combinations of past and novel regimes promote invasion with increasing resident diversity, while others prevent it; legacies may explain conflicting diversity-invasibility relationships. These findings demonstrate the importance of historical legacies in disturbance-prone ecosystems, and underscore the challenges in predicting future community responses to disturbance regime changes.

ecology↗

bioRxiv2025

Dietary Menaquinone-9 Supplementation Does Not Influence Bone Tissue Quality or Bone Mineral Density in Mice

Vitamin K has been implicated in skeletal health because vitamin K-dependent proteins are present in bone. While there are multiple forms of vitamin K, most research has focused on phylloquinone, which is found mainly in plant-based foods, and its metabolite menaquinone-4 (MK4). However, there are additional forms of vitamin K that are bacterially produced that appear to influence bone health but have not yet been studied extensively. Herein, we evaluated the effects of menaquinone-9 (MK9), a bacterially produced form of vitamin K on bone tissue quality and density in young mice. Four-week-old male (n=32) and female (n=32) C57BL/6 mice were supplemented with 0.06 mg/kg diet or 2.1 mg/kg diet of MK9 for 12 weeks. During week 11, a sub-group of mice (n=7/sex/group) received daily deuterium-labeled MK9 to trace its metabolic fate in bone. Liver MK4 and MK9 were significantly higher in mice fed 2.1 mg MK9/kg compared to those receiving 0.06 mg MK9/kg, regardless of sex (all p [≤] 0.017). MK4 was the only vitamin K form detected in bone, with 63-67% of skeletal MK4 in mice fed 2.1 mg MK9/kg derived from deuterium-labeled MK9. Femoral tissue strength, maximum bending moment, section modulus, and bone mineral density did not differ significantly across diet groups in either sex (all p[≥]0.083). Cross-sectional area (p=0.003) and moment of inertia (p=0.001) were lower in female mice receiving 2.1 mg MK9/kg compared to those receiving 0.06 mg MK9/kg, but no differences were found in male mice. Higher bone MK4 concentrations did not correlate with higher bone tissue quality or density. Despite dietary MK9 being a dietary precursor to MK4 in bone, dietary MK9 supplementation did not affect bone tissue quality or bone mineral density. Lay summaryMost research about vitamin K and bone health has focused on phylloquinone, the plant-based vitamin K form, and its metabolite menaquinone-4. Because interest in bacterially produced forms of vitamin K, which are abundant in the intestinal microbiome, is growing, we evaluated the effect of menaquinone-9 (a bacterially-produced form of vitamin K) on skeletal health. We supplemented mice with low and high doses of menaquinone-9 and also used stable-isotope labeled menaquinone-9 to trace its conversion to menaquinone-4 in bone. We found menaquinone-9 served as a precursor to menaquinone-4 in bone, but menaquinone-9 supplementation did not improve bone health.

physiology↗

bioRxiv2024

Allocating Limited Surveillance Effort for Outbreak Detection of Endemic Foot and Mouth Disease

Foot and Mouth Disease (FMD) affects cloven-hoofed animals globally and has become a major economic burden for many countries around the world. Countries that have had recent FMD outbreaks are prohibited from exporting most meat products; this has major economic consequences for farmers in those countries, particularly farmers that experience outbreaks or are near outbreaks. Reducing the number of FMD outbreaks in countries where the disease is endemic is an important challenge that could drastically improve the livelihoods of millions of people. As a result, significant effort is expended on surveillance; but there is a concern that uninformative surveillance strategies may waste resources that could be better used on control management. Rapid detection through sentinel surveillance may be a useful tool to reduce the scale and burden of outbreaks. In this study, we use an extensive outbreak and cattle shipment network dataset from the Republic of Turkiye to test three possible strategies for sentinel surveillance allocation that differ in their data requirements: ranging from low to high data needs, we allocate limited surveillance to [1] farms that frequently send and receive shipments of animals (Network Connectivity), [2] farms near other farms with past outbreaks (Spatial Proximity) and [3] farms that receive many animals from other farms with past outbreaks (Network Proximity). We determine that all of these surveillance methods find a similar number of outbreaks - 2-4.5 times more outbreaks than were detected by surveying farms at random. On average across surveillance efforts, the Network Proximity and Network Connectivity methods each find a similar number of outbreaks and the Spatial Proximity method always finds the fewest outbreaks. Since the Network Proximity method does not outperform the other methods, these results indicate that incorporating both cattle shipment data and outbreak data provides only marginal benefit over the less data-intensive surveillance allocation methods for this objective. We also find that these methods all find more outbreaks when outbreaks are rare. This is encouraging, as early detection is critical for outbreak management. Overall, since the Spatial Proximity and Network Connectivity methods find a similar proportion of outbreaks, and are less data-intensive than the Network Proximity method, countries with endemic FMD whose resources are constrained could prioritize allocating sentinels based on whichever of those two methods requires less additional data collection.

ecology↗

bioRxiv2023

Differences in adult survival drive divergent demographic responses to a decade of field warming on the Tibetan Plateau

O_LIA central question in biodiversity conservation is whether species will maintain viable population dynamics under future climate change. Assessing species extinction risk under climate warming requires demographic studies integrating vital rate responses to long-term warming throughout species life cycle. However, studies of this nature are rare. C_LIO_LIHere, we examine the demographic responses of two co-occurring herbaceous plants, Elymus nutans Griseb. and Helictotrichon tibeticum (Roshev.) Holub, after a decade (2011-2020) of in situ active warming by 2{degrees}C in the grasslands of the Tibetan Plateau. We parameterise Integral Projection Models (IPMs) to project the population dynamics under ambient and long-term warming conditions, and examine the key vital rates responsible for any potential differences in population growth rates. C_LIO_LIWarming has contrasting effects on the two functionally similar co-occurring species: warming promotes the population growth rate of H. tibeticum, but intensifies the population decline of E. nutans. Our elasticity analyses show that survival is the most important vital rate for population viability in both species under both ambient and warmed conditions. Furthermore, our retrospective Life Table Response Experiment (LTRE) analysis reveals that the contrasting fates of the two species under warming mainly arise from the different responses of adult survival, which is significantly promoted in H. tibeticum but slightly reduced in E. nutans. Individual shrinkage occurred 1.6-fold more frequently under warming than ambient conditions for both species, and made considerable negative contributions to their population growth rates in warmed plots. However, such negative effects are offset in H. tibeticum (but not E. nutans) by the positive contribution to population growth rate of the associated increased survival. C_LIO_LISynthesis. Our study illustrates that the responses to climate warming may vary considerably between similar co-occurring species, and species with a demographically compensatory strategy may avoid population collapse. Additionally, caution is needed when generalizing findings among functionally similar species, and that conservation measures should be tailored at the species level. C_LI

ecology↗

bioRxiv2022

Arctic evergreening - encroaching allelopathy in a management blind spot

O_LIOngoing Arctic greening can increase productivity and reindeer pasture quality in the tundra. However, greening may also entail proliferation of unpalatable species, with distinct consequences for pastoral socio-ecological systems (SES). C_LIO_LIWe show extensive greening across 20 reindeer districts in northern Norway between 2003 and 2020. The allelopathic, evergreen dwarf-shrub crowberry biomass increased by 60%, contrasted by smaller increases of deciduous dwarf-shrubs and stagnating forb and graminoid biomass. C_LIO_LIWe found evidence, although uncertain, of a negative relationship between biomass and reindeer densities, but only among forbs, the least abundant plant group. C_LIO_LIOur results challenge the management decision-making, which aims at sustainable pasture management, but which assumes stationary density-dependent relationships. Changes in temporal vs. spatial relationships should be included as management criteria, to avoid mismanaging a SES in transition. C_LIO_LILarge-scale shift towards increased allelopathy may undermine the resource base of a key Arctic herbivore and pastoral SES. C_LI

ecology↗

bioRxiv2020

Dietary Amino Acids Impact LRRK2-induced Neurodegeneration in Parkinson's Disease Models

The G2019S mutation in leucine-rich repeat kinase 2 (LRRK2) is a common cause of Parkinsons disease (PD) and results in age-related dopamine neuron loss and locomotor dysfunction in Drosophila melanogaster through an aberrant increase in bulk neuronal protein synthesis. Under non-pathologic conditions, protein synthesis is tightly controlled by metabolic regulation. Whether nutritional and metabolic influences on protein synthesis can modulate the pathogenic effect of LRRK2 on protein synthesis and thereby impact neuronal loss is a key unresolved question. Here, we show that LRRK2 G2019S-induced neurodegeneration is critically dependent on dietary amino acid content. Low dietary amino acid concentration prevents aberrant protein synthesis and blocks LRRK2 G2019S-mediated neurodegeneration in Drosophila and rat primary neurons. Unexpectedly, a moderately high amino acid diet also blocks dopamine neuron loss and motor deficits in Drosophila through a separate mechanism involving stress-responsive activation of 5-AMP-activated protein kinase (AMPK) and neuroprotective induction of autophagy, implicating the importance of protein homeostasis to neuronal viability. At the highest amino acid diet of the range tested, PD-related neurodegeneration occurs in an age-related manner, but is also observed in control strains, suggesting that it is independent of mutant LRRK2 expression. We propose that dietary influences on protein synthesis and autophagy are critical determinants of LRRK2 neurodegeneration, opening up possibilities for future therapeutic intervention.

neuroscience↗