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Sharmin, Z.

Publications and source records attributed to Sharmin, Z..

2 recordsLinked to original sources

Host pathways associated with human bacterial infections extend to commensal Wolbachia-Drosophila endosymbiosis

Wolbachia bacteria are among the most successful endosymbionts in nature, carried by half of all insect species. Unlike human bacterial pathogens that kill host cells and tissues, Wolbachia endosymbionts are generally carried by insects with little adverse effect. The striking difference in outcome raises a basic question of what aspects of infection mechanisms are conserved across systems. In this study, 37 small molecule inhibitors were used to test whether 14 candidate host processes that affect the abundance of other intracellular bacteria also affect Wolbachia. Compounds that significantly affected the absolute abundance of the Wolbachia surface protein (wsp) gene in D. melanogaster were retested in D. simulans flies. 5 compounds that consistently increased wsp abundance in both systems were associated with the Imd pathway, Calcium signaling, Ras/mTOR signaling, and the Wnt pathway. By contrast, the only compound to suppress wsp abundance was a Ubiquitin-proteasome pathway inhibitor. The implicated host processes were retested for impact on Wolbachia using constitutive and inducible RNAi expression systems in D. melanogaster. These tests corroborated a function for the host target of rapamycin (tor) and armadillo (arm) genes in affecting bodywide wsp abundance. Prior studies have reported that Ras/mTOR and Wnt pathways interact with ATG6 (Beclin-1), representing a possible convergence point for signaling impacts on Wolbachia. ATG6 disruption tests, driven by inducible RNAi expression, also elevated wsp abundance. This work suggests that combined effects of the Wnt pathway, Ras/mTOR signaling, and autophagy normally support Wolbachia containment, moderating the Wolbachia-host endosymbiosis. IMPORTANCEDisease-related microbes have been intensively studied as a model for infection. An intrinsic complication of such studies is bacterial induction of cell stress and cell death. To expand our understanding of cellular infection mechanisms, we studied a bacterial endosymbiont of insects, called Wolbachia, that does not kill the cells it infects. We asked whether cellular processes involved in pathogen infection are also associated with Wolbachia infections. Chemical and genetic tests were used to investigate cellular effects on Wolbachia abundance within fruit flies. We identified a subset of cellular processes with robust, repeatable effects on Wolbachia infection: the Wnt pathway and the Ras/mTor pathway. The results also suggest that multiple cellular pathways act together, which collectively suppresses Wolbachia abundance in vivo. Active host containment may explain in part why Wolbachia is mostly regarded as a neutral endosymbiont, and not as a pathogen.

microbiology↗

Prediction of Deleterious Single Nucleotide Polymorphisms in Human p53 Gene

With a variety of accessible Single Nucleotide Polymorphisms (SNPs) data on human p53 gene, this investigation is intended to deal with detrimental SNPs in p53 gene by executing diverse valid computational tools, including Filter, SIFT, PredictSNP, Fathmm, UTRScan, ConSurf, Phyre, Tm-Adjust, I-Mutant, Task Seek after practical and basic appraisal, dissolvable openness, atomic progression, and analysing the energy minimization. Of 581 p53 SNPs, 420 SNPs are found to be missense or non-synonymous and 435 SNPs are in the 3 prime UTR and 112 SNPs are of every 5 prime UTR from which 16 non synonymous SNPs (nsSNPs) as non-tolerable while PredictSNP package predicted 14 (taking consideration SNP colored green by two or more than 2 analyses is neutral). By concentrating on six bioinformatics tools of various dimensions a combined output is generated where 14 nsSNPs are prone to exert a deleterious effect. By using diverse SNP analysing tools we have found 5 missense SNPs in the 3 crucial amino acids position in the DNA binding domain. The underlying discoveries are fortified by I-Mutant and Project HOPE. The ExPASy-PROSITE tools characterized whether the mutations located in the functional part of the protein or not. This study provides a decisive outcome concluding the accessible SNPs information by recognizing the five harming nsSNPs: rs28934573 (S241F), rs11540652 (R248Q), rs121913342 (R248W), rs121913343 (R273C) and rs28934576 (R273H). The findings of this investigation recognize the detrimental nsSNPs which enhance the danger of various kinds of oncogenesis in patients of different populations in genome-wide studies (GWS).

bioinformatics↗