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Shalev, T. J.

Publications and source records attributed to Shalev, T. J..

2 recordsLinked to original sources

Zone Matcher: A climate-based web application for deployment and assisted migration of forest trees

Populations of forest trees are generally adapted to the climates they inhabit. The farther trees are moved from their local climates, the more long-term growth and survival tend to decrease. Current tree deployment and assisted migration rely on climate distance thresholds (CDTs), which are climatic distances beyond which tree performance is considered unacceptable. Fixed zone systems, which have been used to guide deployment of native or orchard seedlots for more than 50 years, usually consist of contiguous geographic areas (zone units) divided into elevational bands (zones). In contrast, focal zone systems allow seed transfer among fixed zones that have similar climates. By using recent historical climates and future climate projections, focal zones can be used for current tree deployment or assisted migration. We developed a focal-zone system for the Pacific Northwest region of North America. First, we worked with stakeholders to select the base zones for the system. These consisted of geographic zone sets from Washington, Oregon, California, and Idaho/western Montana, and ecological zone sets from the U.S. and British Columbia. Second, by analyzing climate variation across the region, we developed a normalized Euclidean climate distance function consisting of nine climate variables from ClimateNA. Third, we inferred CDTs from analyses of climate variation within the base zones and from provenance tests. Fourth, we compared seed deployment areas using the fixed zone versus focal zone system, with and without assisted migration. Finally, we developed the Zone Matcher web application which implements our focal zone system. Across the region, we identified climate matches among 4,393 partially overlapping zones covering approximately 252 M ha. The unique area covered by these zones was about 167 M ha. Compared to fixed zones, our focal zone system increased the deployment area about 17-to 35-fold for the ecological zones and 70-to 300-fold for the geographic zones. This expands seed deployment options, allows more seedlots to be considered for a planting site, facilitates assisted migration, and simplifies sharing of seedlots among organizations. In addition to climate, seed transfer should also consider factors such as plantation soils, microtopography, and projections of competing vegetation, insects, diseases, and fire.

ecology↗

The western redcedar genome reveals low genetic diversity in a self-compatible conifer

We assembled the 9.8 Gbp genome of western redcedar (WRC, Thuja plicata), an ecologically and economically important conifer species of the Cupressaceae. The genome assembly, derived from a uniquely inbred tree produced through five generations of self-fertilization (selfing), was determined to be 86% complete by BUSCO analysis - one of the most complete genome assemblies for a conifer. Population genomic analysis revealed WRC to be one of the most genetically depauperate wild plant species, with an effective population size of approximately 300 and no significant genetic differentiation across its geographic range. Nucleotide diversity, {pi}, is low for a continuous tree species, with many loci exhibiting zero diversity, and the ratio of {pi} at zero-to four-fold degenerate sites is relatively high ([~] 0.33), suggestive of weak purifying selection. Using an array of genetic lines derived from up to five generations of selfing, we explored the relationship between genetic diversity and mating system. While overall heterozygosity was found to decline faster than expected during selfing, heterozygosity persisted at many loci, and nearly 100 loci were found to deviate from expectations of genetic drift, suggestive of associative overdominance. Non-reference alleles at such loci often harbor deleterious mutations and are rare in natural populations, implying that balanced polymorphisms are maintained by linkage to dominant beneficial alleles. This may account for how WRC remains responsive to natural and artificial selection, despite low genetic diversity.

plant biology↗