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Biology subjects

Shafique, F.

Publications and source records attributed to Shafique, F..

3 recordsLinked to original sources

Beyond Metabolites: A Wearable Differential Biointerface Integrating Antibody and Aptamer Probes for the Real-Time Tracking of Proteins In Vivo

Continuous monitoring of protein biomarkers could transform the management of acute and chronic diseases. Despite tremendous potential, wearable health monitors have remained largely limited to metabolites and small molecules. A key challenge is the limited availability of biointerfaces that reversibly track low-abundance proteins in vivo without user intervention. Here, we present the Differential Aptalyzer, a minimally invasive hydrogel microneedle platform for continuous monitoring of proteins in skin interstitial fluid. The platform combines high-affinity antibodies for selective target capture with aptamers for reversible electrochemical signal transduction. When integrated into a differential electrochemical chip and pulse-assisted sensor regeneration, this approach enables continuous monitoring of proteins in a wearable format. Using cardiac troponin I (cTnI) as a clinically-relevant model analyte, Differential Aptalyzer offers a broad dynamic range (0.003-0.640 ng/mL) and strong specificity against interfering proteins. Importantly, this platform reliably tracks both rising and falling exogenous cTnI levels injected into healthy mice, as well as endogenously elevated cTnI in a double-knockout mouse model of coronary artery disease, demonstrating its capability in continuous protein monitoring and identifying coronary artery disease cohorts.

bioengineering↗

Application of CRISPR-Cas12a technology in zebrafish to simulate beta-globin gene (HBB) mutations

BackgroundThe human {beta}-globin (HBB) gene translated into the hemoglobin subunit beta ({beta}) of the hemoglobin protein. When mutated, it can lead to the blood disorder {beta}-thalassemia. Recently, the CRISPR-Cas12 technology has shown promising potential in treating different genetic abnormalities. ObjectivesThis study aimed to evaluate the feasibility of zebrafish hbbe1.1 gene editing via CRISPR-Cas12a gene-technology. MethodsIn current study, thalassemic mutations were replicated in zebrafish to improve gene editing. the embryonic hemoglobin gene hbbe1.1 was preferred over adult hemoglobin hb{beta}-a1 due to its early detection at larval stages. The CRISPR-Cas12 technology was utilised in combination with phosphorothioated "rescue template" (ssDNA L33P) to introduce base edits to the DNA sequence of zebrafish. ResultsThese experiments indeed resulted in the alteration of a single amino acid at the protein level. With the help of this genetic editing method, we were able to generate a novel zebrafish strain that carried specific amino acid alterations resembling the pathogenic mutations found in HBB for {beta}-thalassemia disease. However, in several cases additional indels or base alterations were observed. ConclusionOur findings suggests that MMEJ double stranded break repair mechanism causes more knock-in events and germline inheritance than HR-mediated events. Modifying the technique could improve results by reducing MMEJ frequency.

genetics↗