bioRxiv Science⌕ Search

Biology subjects

Shadmani, P.

Publications and source records attributed to Shadmani, P..

3 recordsLinked to original sources

How simple physics drives the earliest stages of embryogenesis

The initial stages of mammalian embryo development involve a single fertilised egg that repeatedly divides to create a solid ball of cells called a morula. Despite the apparent simplicity of this process, which involves only one cell type and a few tens of cells, there are still a host of unanswered questions, particularly around the underlying biophysical mechanisms that are at play. To address this, we here develop a novel type of vertex model that includes cortical tension, cell-to-cell adhesion, membrane curvature and cell volume forces, along with a zona pellucida, cell division and the effect of noise. We fit our model to both mouse and human experimental data, which allows us to address a number of key questions including the relative roles of adhesion and tension, how the cortical tension varies around the cell, the purpose of the zona pellucida, and the rules governing the first few cell divisions. We also determine the biophysical effects responsible for compaction and internalisation, including addressing why the morula does not typically decompact during internalisation. Next, we investigate the position-versus-polarisation debate during trophectoderm differentiation, how the division axis is determined during later divisions, and the role of noise. Finally, we compare human and mouse, focussing on the key similarities that may span all mammals. Our use of a force-based computational model allows us to address fundamental questions relating to mammalian development, particularly the underlying biophysical rules governing early embryogenesis, with important applications to stem cell models such as blastoids, conservation efforts of endangered species and embryo grading during IVF. Significance StatementThe very first stages of embryogenesis are a vital but still poorly understood part of development, with important applications to fertility, fertility lifespan and assisted conception such as IVF. Most research in this area has focussed on experimental approaches, ignoring the potential for biophysical modelling. Here, we address this by developing a novel computer simulation of the first thee-to-four cell divisions of the fertilised egg, resulting in a compact bunch of cells called a morula. In particular, we develop a new type of vertex model for the early embryo that for the first time includes contributions from a range of realistic biophysical forces. By analysing real mouse and human embryo data through our model, we reveal how simple physics drives crucial early developmental processes, including compaction, internalisation, cleavage, noise and species-specific differences.

developmental biology↗

A Biophysical Model of Phagocytic Cup Dynamics: The Effect of Membrane Tension

Phagocytosis is a fundamental cellular process by which cells engulf external particles, controlled by receptor-ligand binding and actin-driven membrane dynamics. While a number of mathematical models have been developed to describe this process, they often overlook membrane tension, a key physical parameter known to influence membrane deformation and cytoskeletal behaviour. To address this gap, we present an enhanced mathematical model of receptor motion during phagocytosis that explicitly incorporates the role of membrane tension. Further, we introduce a signalling component that is coupled to receptor dynamics via the membrane tension. We find that including tension results in fundamentally different engulfment behaviour, which is slower than that predicted by models without tension. In particular, unlike in the previous version of this model, we show that tension can lead to stalled engulfment, an experimentally-observed phenomenon known as frustrated phagocytosis. We also find that signalling is able to modify engulfment behaviour, especially at later stages, and is able to alter cup growth to become linear in time without the need for receptor drift as introduced in previous models. These findings offer new insights into the role of membrane tension and biophysical regulation in phagocytosis, with implications for immune function, cell motility and targeted drug delivery.

cell biology↗

Dynamic calcium-mediated stress response and recovery signatures in the fungal pathogen, Candida albicans

Calcium (Ca2+) is an important second messenger for activating stress response signalling and cell adaptation in eukaryotic cells yet intracellular Ca2+-dynamics in fungi is poorly understood due to lack of effective real-time Ca2+ reporters. We engineered the GCaMP6f construct for use in the fungal pathogen, Candida albicans, and used live-cell imaging to observe dynamic Ca2+ spiking as well as slower changes in ambient Ca2+-GCaMP levels elicited by stress or gene deletion. Short-term exposure to membrane, osmotic or oxidative stress generated immediate stress-specific responses and repeated exposure revealed differential recovery signatures. Osmotic stress caused yeast cell shrinkage and no adaptation response, where Ca2+-GCaMP spiking was inhibited by 1 M NaCl but not by 0.66 M CaCl2. Treatment with SDS caused a spike-burst, raised ambient Ca2+-GCaMP levels and significant cell death, but surviving cells adapted over subsequent exposures. Treatment with 5 mM H2O2 abolished spiking and caused transient autofluorescence but cells adapted such that spiking returned and autofluorescence diminished on repeated exposure. Adaptation to H2O2 was dependent on Cap1, extracellular Ca2+ and calcineurin, but not on its downstream target, Crz1. Ca2+-dynamics were not affected by H2O2 in the hog1{Delta} or yvc1{Delta} mutants, suggesting a pre-adapted, resistant state, possibly due to changes in membrane permeability. Live-cell imaging of Ca2+-GCaMP responses in individual cells has therefore revealed the dynamics of Ca2+-influx, signalling and homeostasis and their role in the temporal stress response signatures of C. albicans.

microbiology↗