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Segers, F. H. I. D.

Publications and source records attributed to Segers, F. H. I. D..

2 recordsLinked to original sources

Extensive loss of forage diversity in social bees due to flower constancy and communication in simulated environments

Bees require a diverse diet for a healthy development. Many bee species show flower constancy, that is, they visit flowers of just one species during a foraging trip. Flower constancy is important for plant reproduction, but it could impair dietary diversity in bees, especially in biodiversity-depleted, human-modified landscapes. It is assumed that flower constancy does not lower dietary diversity in social bees, such as honey bees or bumble bees, because different colony members can specialise on different plant species. However, this has never been tested. We used computer simulations to investigate the effects of flower constancy on colony diet in plant species-rich and species-poor landscapes. We also explored if communication about food sources, which is used in many social bees, further reduces forage diversity. Our simulations reveal an extensive loss of forage diversity due to flower constancy in both plant species-rich and species-poor environments. Small colonies often discovered only 30-50% of all available plant species, thereby increasing the risk of nutritional deficiencies. Our simulation results could explain why bumble bees, which have small colony sizes, are less flower constant than honey bees and stingless bees, which have larger colony sizes. Remarkably, when colonies also communicated about food sources, Simpsons diversity, which measures the evenness of flower visits, approached near zero in plant species-poor environments. Finally, we found that food source clustering, but not habitat fragmentation impaired dietary diversity. These findings can help in the design of landscapes that increase forage diversity and improve bee nutrition and health in human-modified landscapes.

ecology↗

What is in a lichen? A metagenomic approach to reconstruct the holo-genome of Umbilicaria pustulata

Lichens are valuable models in symbiosis research and promising sources of biosynthetic genes for biotechnological applications. Most lichenized fungi grow slowly, resist aposymbiotic cultivation, and are generally poor candidates for experimentation. Obtaining contiguous, high quality genomes for such symbiotic communities is technically challenging. Here we present the first assembly of a lichen holo-genome from metagenomic whole genome shotgun data comprising both PacBio long reads and Illumina short reads. The nuclear genomes of the two primary components of the lichen symbiosis - the fungus Umbilicaria pustulata (33 Mbp) and the green alga Trebouxia sp. (53 Mbp) - were assembled at contiguities comparable to single-species assemblies. The analysis of the read coverage pattern revealed a relative cellular abundance of approximately 20:1 (fungus:alga). Gap-free, circular sequences for all organellar genomes were obtained. The community of lichen-associated bacteria is dominated by Acidobacteriaceae, and the two largest bacterial contigs belong to the genus Acidobacterium. Gene set analyses showed no evidence of horizontal gene transfer from algae or bacteria into the fungal genome. Our data suggest a lineage-specific loss of a putative gibberellin-20-oxidase in the fungus, a gene fusion in the fungal mitochondrion, and a relocation of an algal chloroplast gene to the algal nucleus. Major technical obstacles during reconstruction of the holo-genome were coverage differences among individual genomes surpassing three orders of magnitude. Moreover, we show that G/C-rich inverted repeats paired with non-random sequencing error in PacBio data can result in missing gene predictions. This likely poses a general problem for genome assemblies based on long reads.

genomics↗