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Biology subjects

Seelig, J.

Publications and source records attributed to Seelig, J..

2 recordsLinked to original sources

Virtual reality for animal navigation with camera-based optical flow tracking

BackgroundVirtual reality combined with spherical treadmills is used across species for studying neural circuits underlying navigation.\n\nNew MethodWe developed an optical flow-based method for tracking treadmil ball motion in real-time using a single high-resolution camera.\n\nResultsTracking accuracy and timing were determined using calibration data. Ball tracking was performed at 500 Hz and integrated with an open source game engine for virtual reality projection. The projection was updated at 120 Hz with a latency with respect to ball motion of 30 {+/-} 8 ms.\n\nComparison with Existing Method(s)Optical flow based tracking of treadmill motion is typically achieved using optical mice. The camera-based optical flow tracking system developed here is based on off-the-shelf components and offers control over the image acquisition and processing parameters. This results in flexibility with respect to tracking conditions - such as ball surface texture, lighting conditions, or ball size - as well as camera alignment and calibration.\n\nConclusionsA fast system for rotational ball motion tracking suitable for virtual reality animal behavior across different scales was developed and characterized.

neuroscience

Bessel beam tomography for fast volume imaging

Light microscopy on dynamic samples, for example neural activity in the brain, requires imaging large volumes at high rates. Here, we develop a tomography approach for scanning fluorescence microscopy which allows recording volume images at frame scan rates. Volumes are imaged by simultaneously recording four independent projections at different angles using temporally multiplexed, tilted Bessel beams. From the resulting projections, volumes are reconstructed using inverse Radon transforms combined with three dimensional convolutional neural networks (U-net). This tomography approach is suitable for experiments requiring fast volume imaging of sparse samples, as for example often encountered when imaging neural activity in the brain.

neuroscience