Biology subjects

Schreiner, A.

Publications and source records attributed to Schreiner, A..

4 recordsLinked to original sources

bioRxiv2024

PCMD-1 stabilizes the PCM scaffold and facilitates centriole separation

Centrosomes are highly dynamic organelles, and maintaining their stability is crucial for spindle pole integrity and bipolar spindle formation. Centrosomes consist of a pair of centrioles surrounded by the pericentriolar material (PCM). In Caenorhabditis elegans, interactions between the PCM scaffold protein SPD-5 and the regulatory kinase PLK-1 are essential for PCM formation and disassembly. However, how PCM stability is established and maintained remains an open question. Here, we address this question by analyzing the function of PCMD-1, a protein that predominantly localizes to centrioles. Mutations in the predicted PLK-1 binding sites of PCMD-1 result in a reduction of centrosomal PLK-1 and PCMD-1 levels, leading to severe distortion of the PCM scaffold. The disorganization of the PCM is already evident during its formation and results in the assembly of a structurally unstable mitotic centrosome, which is unable to resist the microtubule pulling forces exerted on the spindle pole. As a consequence of a weakened PCM scaffold, the pulling forces are not effectively relayed to the entrapped centriole pair, resulting in delayed centriole separation in late anaphase. Together, these findings show that PCMD-1, which predominantly localizes to centrioles and tethers the PCM scaffold to them, is essential for stabilizing the entire PCM scaffold and ensuring timely centriole separation during PCM disassembly. We propose a model in which PCMD-1 initiates the ordered assembly of the PCM scaffold by biasing the PCM core to a certain intrinsic order around the centrioles. This intrinsic order acts as a seed that propagates throughout the surrounding micron-scale PCM scaffold, providing the necessary strength and structural integrity for the centrosome.

cell biology↗

bioRxiv2023

Assessing the performance of the Cell Painting assay across different imaging systems

Quantitative microscopy is a powerful method for performing phenotypic screens from which image-based profiling can extract a wealth of information, termed profiles. These profiles can be used to elucidate the changes in cellular phenotypes across cell populations from different patient samples or following genetic or chemical perturbations. One such image-based profiling method is the Cell Painting assay, which provides morphological insight through the imaging of eight cellular compartments. Here, we examine the performance of the Cell Painting assay across multiple high-throughput microscope systems and find that all are compatible with this assay. Furthermore, we determine independently for each microscope system the best performing settings, providing those who wish to adopt this assay an ideal starting point for their own assays. We also explore the impact of microscopy setting changes in the Cell Painting assay and find that few dramatically reduce the quality of a Cell Painting profile, regardless of the microscope used.

cell biology↗

bioRxiv2020

PCMD-1 bridges the centrioles and the PCM scaffold in C. elegans

Correct cell division relies on the formation of a bipolar spindle. In animal cells, microtubule nucleation at the spindle poles is facilitated by the pericentriolar material (PCM), which assembles around a pair of centrioles. Although centrioles are essential for PCM assembly, proteins that anchor the PCM to the centrioles are less known. Here we investigate the molecular function of PCMD-1 in bridging the PCM and the centrioles in Caenorhabditis elegans. We demonstrate that centrosomal recruitment of PCMD-1 is dependent on the outer centriolar protein SAS-7. While the most C-terminal part of PCMD-1 is sufficient to target it to the centrosome, the coiled-coil domain promotes its accumulation by facilitating self-interaction. We reveal that PCMD-1 is bridging the centrioles and PCM scaffold through protein-protein interactions with the PCM scaffold protein SPD-5, the mitotic kinase PLK-1 and the centriolar protein SAS-4. Using an ectopic translocation assay, we show that PCMD-1 is able to selectively recruit downstream PCM scaffold components to an ectopic location in the cell, indicating that PCMD-1 is sufficient to anchor the PCM scaffold proteins to the centrioles. Our work suggests that PCMD-1 is an essential functional bridge between the centrioles and the PCM.

cell biology↗

bioRxiv2019

Segmenting nuclei in brightfield images with neural networks

Identifying nuclei is a standard first step to analysing cells in microscopy images. The traditional approach relies on signal from a DNA stain, or fluorescent transgene expression localised to the nucleus. However, imaging techniques that do not use fluorescence can also carry useful information. Here, we demonstrate that it is possible to accurately segment nuclei directly from brightfield images using deep learning. We confirmed that three convolutional neural network architectures can be adapted for this task, with U-Net achieving the best overall performance, Mask R-CNN providing an additional benefit of instance segmentation, and DeepCell proving too slow for practical application. We found that accurate segmentation is possible using as few as 16 training images and that models trained on images from similar cell lines can extrapolate well. Acquiring data from multiple focal planes further helps distinguish nuclei in the samples. Overall, our work liberates a fluorescence channel reserved for nuclear staining, thus providing more information from the specimen, and reducing reagents and time required for preparing imaging experiments.

bioinformatics↗