Biology subjects

Scholz, H.

Publications and source records attributed to Scholz, H..

16 recordsLinked to original sources

bioRxiv2026

Continued genomic surveillance of Vibrio cholerae O1 isolates from cholera cases in Europe, 2023-2024

Background: Following the global resurgence of cholera in 2022, 51 cholera cases were reported by European countries. We previously characterised 49 Vibrio cholerae O1 isolates from these cases using whole genome sequencing. In 2023 and 2024, 59 additional cholera cases were reported by 11 European countries. Aim: We aimed to confirm that V. cholerae O1 isolates associated with cholera cases reported in Europe in 2023-2024 belonged to the epidemic seventh pandemic El Tor (7PET) lineage rather than to non-epidemic V. cholerae O1 lineages, and to characterise their virulence, antimicrobial resistance (AMR) determinants and phylogenetic relationships. Methods: Fifty V. cholerae O1 isolates were available for whole genome sequencing, of which 49 yielded genomes of sufficient quality for analysis. Genomes were analysed together with more than 1,500 publicly available 7PET genomes to place the European isolates into a global phylogenetic context. Results: All 49 genomes belonged to the 7PET lineage and Wave 3. Four sub-lineages were identified: BD1.2 (2/49), AFR12 (6/49), AFR13 (8/49) and Pre-AFR15 (33/49). The predominance of Pre-AFR15 confirms its continued contribution to the ongoing global cholera resurgence. In contrast to our 2022 survey, eight highly drug-resistant AFR13 isolates were detected, documenting the international spread of this highly drug-resistant clone resistant to multiple first-line antimicrobial agents. Conclusion: Whole genome sequencing should be routinely used by reference laboratories to distinguish epidemic 7PET from non-epidemic V. cholerae O1 lineages and to monitor the emergence and international spread of AMR clones. Continued collaborative genomic surveillance of travel-associated cholera cases can provide early insights into the emergence, international spread and antimicrobial resistance of 7PET sub-lineages.

genomics↗

bioRxiv2025

The PDE4D ortholog Dunce suppresses memory in Drosophila melanogaster

The regulation of cAMP concentration is a key component of the mechanisms underlying learning and memory. In Drosophila melanogaster, the cAMP-specific phosphodiesterase mutant dunce1 results in increased levels of cAMP but poorer associative short-term memory and anesthesia-resistant memory. This raises the question of how elevated cAMP levels can cause defects in both short-term and long-term memory. To answer this question, we analyzed associative olfactory learning and memory in Drosophila larvae of both sexes with the isoform-specific dunce{Delta}143 mutation. Flies with this mutation exhibited better learning than flies with the dunce1 mutant. The memory facilitated by dunce{Delta}143 was stable and easily reversable. The improvement in memory was also traced to a defined subset of neurons. A comparison of the subcellular localization of Dunce isoforms indicates that the regulation of cAMP in the soma suppresses early memory formation. We revealed that Dunce regulates at least two different aspects of learning and memory, specifically, preventing the premature formation of memory and facilitating the formation of memory after multiple training sessions. The different functions of Dunce might be due to different cell types. Significance StatementIn model systems such as Aplysia and mice, elevated cAMP levels are associated with increased learning and memory performance; in contrast, Drosophila dunce mutants with elevated cAMP levels exhibit memory decline. Here, we revisited the function of the phosphodiesterase 4D ortholog Dunce and showed that Dunce both promotes and inhibits memory formation.

neuroscience↗

bioRxiv2025

Deep Learning for Predicting Stem Cell Efficiency for use in Beta Cell Differentiation

Recent clinical trial data have shown that cell therapy holds curative potential for type-1 diabetes, however the large amounts of lab-grown cells required is a substantial bottleneck. The necessary cell differentiation process exhibits substantial variability, even among clones of induced pluripotent stem cells generated from the same patient. In contrast to many established data sets in medical imaging, human experts struggle to see the difference between highly- and lowly-efficient cell clones. We therefore propose an image-based deep learning model to guide the selection of the most efficient stem cell clones. We apply different deep learning model architectures to learn the morphological differences between good and bad stem cell clones and classify them based on only phase-contrast imaging. To gain critical insight into the learned features and enhance trust in our model, we use layer-wise relevance propagation (LRP), and Fourier-based frequency analysis. Using an EfficientNet-V2-S model, we obtain a novel early prediction for the outcome of the differentiation process from patient-derived stem cell to {beta}-cells using only phase-contrast images. Clone level accuracy is 76.7 % at 24 hours and 96.7 % at 53 hours after start of differentiation. The LRP-generated attribution maps and structure factor analysis show that the structure of the cell population is an important predictive feature. All in all, we present a highly predictive model for successful stem cell differentiation from phase-contrast images, which learns biologically relevant features. This study is a proof-of-concept that deep learning combined with label-free imaging can guide selection of induced pluripotent stem cell clones, thereby reduce cost of {beta}-cell production, and bring curative treatments one step closer to the clinic.

bioinformatics↗

bioRxiv2024

Different serotonergic neurons regulate appetite for sucrose and hunger for proteins

For the organism it is important to replenish internal energy storages selectively and selective appetite for nutrients might uncover internal energy requirements. How is the selective uptake of a specific nutrient regulated? Here we show that in Drosophila melanogaster different sets of serotonergic neurons regulate appetite for sucrose and hunger for proteins. Increased neuronal activity in specific subsets of serotonergic neurons and interfering with serotonin reuptake using a mutated serotonin transporter reduced the appetite for sucrose selectively, but not the hunger for proteins. The insulin receptor together with the serotonin transporter regulates the selective sucrose appetite. We provide evidence that the cellular location of the serotonin transporter depends on the insulin receptor. This mechanism might allow optimizing nutrient intake and in turn might prevent overconsumption by repressing appetite for sucrose. Given the conserved nature of the molecules involved it is likely that the mechanism is conserved in higher organisms.

neuroscience↗

bioRxiv2024

The Drosophila tyramine-beta-hydroxylase gene encodes multiple isoforms with different functions

The Tyramine-beta-hydroxylase (Tbh) is required for octopamine synthesis. To better understand the function of Tbh in neurotransmitter synthesis, we analyzed the molecular genetic organization of the Drosophila melanogaster Tbh gene and found that the Tbh gene encodes multiple transcripts. The transcripts differ in their 5UTR, which results in proteins that differ in their size and putative phosphorylation sites, suggesting that the Tbh function is regulated at translational and posttranslational levels. We generated a new Tbh mutant - TbhDel3 - using FLP/FRT recombination mutagenesis to remove the translational start site still that is present in TbhnM18mutants. The TbhDel3 mutants share ethanol tolerance and larval locomotion defects with the TbhnM18 mutants. But, they differ in terms of their cellular stress response. To develop normal levels of ethanol tolerance, Tbh is required in a subset of Tbh expressing neurons in the adult brain, which was identified using a newly generated Tbh-Gal4 driver. Taking advantage of a newly generated Tbh antibody serum, we show that one Tbh isoform is expressed in a group of peptidergic Hugin-positive and noradrenergic neurons uncoupling Tbh function from octopamine synthesis. The existence of different functional Tbh isoforms impacts our understanding of the regulatory mechanisms of neurotransmitter synthesis and the function of the octopaminergic neurotransmitter system in cellular processes and the regulation of behavior. Author SummaryVertebrates and insects have structurally identical signaling molecules in their nervous system, such as the neurotransmitter dopamine. But, there are also neurotransmitters that are thought to only occur in the vertebrate or insect brain. Noradrenaline is one such neurotransmitter that regulates flight and fight responses in vertebrates. In insects such as the fruit fly Drosophila melanogaster, the structurally very similar neurotransmitter octopamine is considered to be an invertebrate-specific neurotransmitter that performs similar functions to noradrenaline. The functional similarities also extend to enzymes required for synthesis. Our analysis shows that the enzyme for octopamine synthesis exists in several variations and that the connection between the enzymes and the synthesized neurotransmitter may not be as simple as presumed. Exploiting molecular, behavioral and neuroanatomical studies, we show that different variants might be used in response to different environmental conditions and/or the synthesis of alternative, structurally similar neurotransmitters, such as noradrenaline. These results challenge our view on the functions of octopamine and noradrenaline in the regulation of behavior.

neuroscience↗

bioRxiv2023

Simultaneous LC-MS determination of glucose regulatory peptides secreted by stem cell-derived islet organoids

For studying stem cell-derived islet organoids (SC-islets) in an organ-on-chip platform, we have developed a reversed phase liquid chromatography tandem mass spectrometry (RPLC-MS/MS) method allowing for simultaneous determination of insulin, somatostatin-14, and glucagon, with improved matrix robustness compared to earlier methodology. Combining phenyl/hexyl-C18 separations using 2.1 mm inner diameter LC columns and triple quadrupole mass spectrometry, identification and quantification were secured with negligible variance in retention time and quantifier/qualifier ratios, negligible levels of carry-over (< 2%), and sufficient precision ({+/-} 10% RSD) and accuracy ({+/-} 15% relative error) with and without use of internal standard. The here developed RPLC-MS/MS method showed that the SC-islets have an insulin response dependent on glucose concentration, and the SC-islets produce and release somatostatin-14 and glucagon. The RPLC-MS/MS method for these peptide hormones was compatible with an unfiltered off-line sample collection from SC-islets cultivated on a pump-less, recirculating organ-on-chip (rOoC) platform. The SC-islets background secretion of insulin was not significantly different on the rOoC device compared to a standard cell culture well-plate. Taken together, RPLC-MS/MS is well suited for multi-hormone measurements of SC-islets on an organ-on-chip platform.

biochemistry↗

bioRxiv2023

Octopamine integrates the status of internal energy supply into the formation of food-related memories

The brain regulates food intake in response to internal energy demands and food availability. However, can internal energy storage influence the type of memory that is formed? We show that the duration of starvation determines whether Drosophila melanogaster forms appetitive short-term or longer-lasting intermediate memories. The internal glycogen storage in the muscles and adipose tissue influences how intensely sucrose associated information is stored. Insulin-like signaling in octopaminergic reward neurons integrates internal energy storage into memory formation. Octopamine, in turn, suppresses the formation of long-term memory. Octopamine is not required for short-term memory, because octopamine-deficient mutants can form appetitive short-term memory for sucrose and to other nutrients depending on the internal energy status. The reduced positive reinforcing effect of sucrose at high internal glycogen levels combined with the increased stability of food-related memories due to prolonged periods of starvation could lead to increased food intake.

neuroscience↗

bioRxiv2022

Determination of insulin secretion from stem cell-derived islets with liquid chromatography-tandem mass spectrometry

Organoids are laboratory-grown 3D organ models, mimicking human organs for e.g. drug development and personalized therapy. Islet organoids (typically 100-200 m), which can be grown from the patients own cells, are emerging as prototypes for transplantation-based therapy of diabetes. Selective methods for quantifying insulin production from islet organoids are needed, but sensitivity and carry-over have been major bottlenecks in previous efforts. We have developed a reverse phase liquid chromatography-tandem mass spectrometry (RPLC-MS/MS) method for studying the insulin secretion of islet organoids. In contrast to our previous attempts using nano-scale LC columns, conventional 2.1 mm inner diameter LC column (combined with triple quadrupole mass spectrometry) was well suited for sensitive and selective measurements of insulin secreted from islet organoids with low microliter-scale samples. Insulin is highly prone to carry-over, so standard tubings and injector parts were replaced with shielded fused silica nanoViper connectors. As samples were expected to be very limited, an extended Box-Behnken experimental design for the MS settings was conducted to maximize performance. The finale method has excellent sensitivity, accuracy and precision (limit of detection: [≤] 0.2 pg/L, relative error: [≤] {+/-}10%, relative standard deviation: < 10%), and was well suited for measuring 20 L amounts of Krebs buffer containing insulin secreted from islet organoids.

bioengineering↗

bioRxiv2022

The function of ethanol in olfactory associative behaviors in Drosophila melanogaster larvae

Drosophila melanogaster larvae develop on fermenting fruits with increasing ethanol concentrations. To address the relevance of ethanol in the behavioral response of the larvae, we analyzed the function of ethanol in the context of olfactory associative behavior in Canton S and w1118 larvae. The motivation of larvae to move toward or out of an ethanol-containing substrate depends on the ethanol concentration and the genotype. Ethanol in the substrate reduces the attraction to odorant cues in the environment. Relatively short repetitive exposures to ethanol, which are comparable in their duration to reinforcer representation in olfactory associative learning and memory paradigms, result in positive or negative association with the paired odorant or indifference to it. The outcome depends on the order in which the reinforcer is presented during training, the genotype and the presence of the reinforcer during the test. Independent of the order of odorant presentation during training, Canton S and w1118 larvae do not form a positive or negative association with the odorant when ethanol is not present in the test context. When ethanol is present in the test, w1118 larvae show aversion to an odorant paired with a naturally occurring ethanol concentration of 5%. Our results provide insights into the parameters influencing olfactory associative behaviors using ethanol as a reinforcer in Drosophila larvae and indicate that short exposures to ethanol might not uncover the positive rewarding properties of ethanol for developing larvae.

neuroscience↗

bioRxiv2022

Mutation of the Drosophila serotonin transporter dSERT disrupts courtship and feeding and increases both daytime and nighttime sleep

The Serotonin Transporter (SERT) regulates extracellular serotonin levels and is the target of most current drugs used to treat depression. The mechanisms by which inhibition of SERT activity influences behavior are poorly understood. To address this question in the model organism Drosophila melanogaster, we developed new loss of function mutations in Drosophila SERT (dSERT). Previous studies in both flies and mammals have implicated serotonin as an important neuromodulator of sleep, and our newly generated dSERT mutants show an increase in total sleep and altered sleep architecture. Differences in daytime vs. nighttime sleep architecture as well as genetic rescue experiments unexpectedly suggest that distinct serotonergic circuits may modulate daytime versus nighttime sleep. dSERT mutants also show defects in copulation and food intake, akin to the clinical side effects of SSRIs. Starvation did not overcome the sleep drive in the mutants. Additionally in males, but not female dSERT mutants, the drive to mate also failed to overcome sleep drive. dSERT may be used to further explore the mechanisms by which serotonin regulates sleep and its interplay with other complex behaviors. Author SummaryMany medications used to treat depression and anxiety act by changing serotonin levels in the brain. Fruit flies also use serotonin and can be used as a model to study the brain. We have made a fly mutant for the serotonin transporter (SERT), which is the target of antidepressants in humans. The mutants sleep more, eat less, and have a decreased sex drive. These flies can be used to study the neuronal pathways by which serotonin regulates sleep, eating and sexual behaviors and may help us to understand the behavioral effects of antidepressants.

neuroscience↗

bioRxiv2022

Adipose-derived stromal cells preserve pancreatic islet function in a transplantable 3D bioprinted scaffold

Intra-portal islet transplantation is the method of choice for treatment of insulin dependent type 1 diabetes, but its outcome is hindered by limited islet survival due to the immunological and metabolic stress post transplantation. Adipose-derived stromal cells (ASCs) promise to improve significantly the islet micro-environment but an efficient long-term delivery method has not been achieved. We therefore explore the potential of generating ASC enriched islet transplant structure by 3D bioprinting. Here, we fabricate a double-layered 3D bioprinted scaffold for islets and ASCs by using alginate-nanofibrillated cellulose bioink. We demonstrate the diffusion properties of the scaffold and report that human ASCs increase the islet viability, preserve the endocrine function, and reduce pro-inflammatory cytokines secretion in vitro. Intraperitoneal implantation of the ASCs and islets in 3D bioprinted scaffold improve the long-term function of islets in diabetic mice. Our data reveals an important role for ASCs on the islet micro-environment. We suggest a novel cell therapy approach of ASCs combined with islets in a 3D structure with a potential for clinical beta cell replacement therapies at extrahepatic sites.

cell biology↗

bioRxiv2021

Ethanol-guided behavior in Drosophila larvae

Chemosensory signals allow vertebrates and invertebrates not only to orient in its environment toward energy-rich food sources to maintain nutrition but also to avoid unpleasant or even poisonous substrates. Ethanol is a substance found in the natural environment of Drosophila melanogaster. Accordingly, D. melanogaster has evolved specific sensory systems, physiological adaptations, and associated behaviors at its larval and adult stage to perceive and process ethanol. To systematically analyze how D. melanogaster larvae respond to naturally occurring ethanol, we examined ethanol-induced behavior in great detail by parametrically reevaluating existing approaches and comparing them with new experiments. Using behavioral assays, we confirm that larvae are attracted to different concentrations of ethanol in their environment. This behavior is controlled both by olfactory and contact cues. It is independent of previous exposure to ethanol in their food. Moreover, moderate, naturally occurring ethanol concentration of 4% results in increased larval fitness. On the contrary, higher concentrations of 10% and 20% ethanol, which rarely or never appear in nature, increase larval mortality. Finally, ethanol also serves as a positive teaching signal in learning and memory and updates valence associated with simultaneously processed odor information. Since information on how larvae perceive and process ethanol at the genetic and neuronal level is limited, the establishment of standardized assays described here is an important step towards their discovery.

animal behavior and cognition↗

bioRxiv2020

Music for cells? A systematic review of studies investigating the effects of audible sound played through speaker-based systems to cell cultures.

There have been several studies investigating whether musical sound can be used as cell stimuli in recent years. We systematically searched publications to get an overview of studies that have used audible sound played through speaker-based systems to induce mechanical perturbation in cell cultures. A total of 12 studies were identified. We focused on the experimental setups, the sound materials used as stimuli, and the outcomes. The stimuli were categorized into simple and complex sounds. The effects were reported as enhanced cell migration, proliferation, colony formation, and differentiation ability. However, there are significant differences in methodologies and cell type-specific outcomes, which made it difficult to find a systematic pattern in the results. We suggest that future experiments should consider using: 1) a more controlled acoustic environment), 2) standardized sound and noise measurement methods, and 3) a more comprehensive range of controlled sound stimuli.

cell biology↗

bioRxiv2020

Organoid-in-a-column coupled on-line with liquid chromatography-mass spectrometry

Organoids, i.e. laboratory-grown organ models developed from stem cells, are emerging tools for studying organ physiology, disease modeling and drug development. On-line analysis of organoids with mass spectrometry would provide analytical versatility and automation. To achieve these features with robust hardware, we have loaded liquid chromatography column housings with induced pluripotent stem cell (iPSC) derived liver organoids and coupled the "organ-in-a-column" units on-line with liquid chromatography-mass spectrometry (LC-MS). Liver organoids were co-loaded with glass beads to achieve an even distribution of organoids throughout the column while preventing clogging. The liver organoids were interrogated "on column" with heroin, followed by on-line monitoring of the drugs phase 1 metabolism. Enzymatic metabolism of heroin produced in the "organ-in-a-column" units was detected and monitored using a triple quadrupole MS instrument, serving as a proof-of-concept for on-line coupling of liver organoids and mass spectrometry. Taken together, the technology allows direct integration of liver organoids with LC-MS, allowing selective and automated tracking of drug metabolism over time.

bioengineering↗

bioRxiv2020

Single-dose ethanol intoxication causes acute and lasting neuronal changes in the brain

Alcohol intoxication at early ages is a risk factor for development of addictive behavior. To uncover neuronal molecular correlates of acute ethanol intoxication, we used stable-isotope labeled mice combined with quantitative mass spectrometry to screen over 2000 hippocampal proteins of which 72 changed synaptic abundance up to two-fold after ethanol exposure. Among those were mitochondrial proteins and proteins important for neuronal morphology, including MAP6 and Ankyrin-G. Based on these candidate proteins, we found acute and lasting molecular, cellular, and behavioral changes following a single intoxication in alcohol-naive mice. Immunofluorescence analysis revealed a shortening of axon initial segments. Longitudinal two-photon in vivo imaging showed increased synaptic dynamics and mitochondrial trafficking in axons. Knockdown of mitochondrial trafficking in dopaminergic neurons abolished conditioned alcohol preference in Drosophila. This introduces mitochondrial trafficking as a process implicated in reward learning, and highlights the potential of high-resolution proteomics to identify cellular mechanisms relevant for addictive behavior.

neuroscience↗

bioRxiv2019

Encapsulation boosts islet-cell signature in differentiating human induced pluripotent stem cells via integrin signalling

Cell replacement therapies hold great therapeutic potential. Nevertheless, our knowledge of the mechanisms governing the developmental processes is limited, impeding the quality of differentiation protocols. Generating insulin-expressing cells in vitro is no exception, with the guided series of differentiation events producing heterogeneous cell populations that display mixed pancreatic islet phenotypes and immaturity. The achievement of terminal differentiation ultimately requires the in vivo transplantation of, usually, encapsulated cells. Here we show the impact of cell confinement on the pancreatic islet signature during the guided differentiation of alginate encapsulated human induced pluripotent stem cells (hiPSCs). Our results show that encapsulation improves differentiation by significantly reshaping the proteome landscape of the cells towards an islet-like signature. Pathway analysis is suggestive of integrins transducing the encapsulation effect into intracellular signalling cascades promoting differentiation. These analyses provide a molecular framework for understanding the confinement effects on hiPSCs differentiation while confirming its importance for this process.

molecular biology↗