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Schmidt, A. H.

Publications and source records attributed to Schmidt, A. H..

2 recordsLinked to original sources

Memory Retrieval Effects as a Function of Differences in Phenomenal Experience

Conscious experience and perception are restricted to a single perspective. There is evidence to suggest differences in phenomenal experience can produce observable differences in behavior, however it is not well understood how these differences might influence memory. We used fMRI to scan n=49 participants while they encoded and performed a recognition memory test for faces and words. We calculated a cognitive bias score reflecting individual participants propensity toward either Visual Imagery or Internal Verbalization based on their responses to the Internal Representations Questionnaire (IRQ). We found weak positive correlations between memory performance for faces and a bias toward visual imagery and between memory performance for words and bias toward internal verbalization. There were typical patterns of activation differences between words and faces during both encoding and retrieval. There was no effect of internal representation bias on fMRI activation during encoding. At retrieval, however, a bias toward visualization was positively correlated with memory-related activation for both words and faces in inferior occipital gyri. Further, there was a crossover interaction in a network of brain regions such that visualization bias was associated with greater activation for words and verbalization bias was associated with greater activation for faces, consistent with increased effort for non-preferred stimulus retrieval. These findings suggest that individual differences in cognitive representations affect neural activation across different types of stimuli, potentially affecting memory retrieval performance.

neuroscience↗

DR2S: An Integrated Algorithm Providing Reference-Grade Haplotype Sequences from Heterozygous Samples

BackgroundHigh resolution HLA genotyping of donors and recipients is a crucially important prerequisite for haematopoetic stem-cell transplantation and relies heavily on the quality and completeness of immunogenetic reference sequence databases of allelic variation. ResultsHere, we report on DR2S, an R package that leverages the strengths of two sequencing technologies - the accuracy of next-generation sequencing with the read length of third-generation sequencing technologies like PacBios SMRT sequencing or ONTs nanopore sequencing - to reconstruct fully-phased high-quality full-length haplotype sequences. Although optimised for HLA and KIR genes, DR2S is applicable to all loci with known reference sequences provided that full-length sequencing data is available for analysis. In addition, DR2S integrates supporting tools for easy visualisation and quality control of the reconstructed haplotype to ensure suitability for submission to public allele databases. ConclusionsDR2S is a largely automated workflow designed to create high-quality fully-phased reference allele sequences for highly polymorphic gene regions such as HLA or KIR. It has been used by biologists to successfully characterise and submit more than 500 HLA alleles and more than 500 KIR alleles to the IPD-IMGT/HLA and IPD-KIR databases.

bioinformatics↗