Biology subjects

Sarnataro, R.

Publications and source records attributed to Sarnataro, R..

3 recordsLinked to original sources

bioRxiv2025

Cleared tissue dual-view oblique plane microscopy

We present a dual-view oblique plane microscope (dOPM) for imaging thick optically cleared tissue samples using a silicone immersion primary objective. The custom-designed remote refocusing relay utilizes stock optics to achieve remote refocusing in refractive index-matched samples. The spatial resolution of the system was characterized using a series of fluorescent bead phantoms with refractive indices ranging from 1.4-1.5, with the point spread function full width at half maximum measuring [~]0.5 {micro}m laterally and [~]1 {micro}m axially for a refractive index-matched bead sample, with minimal degradation over a >250 {micro}m axial range. We characterize how the remote refocusing performance at sample refractive indices up to n = 1.5 can be partially compensated for using adjustment of the correction collar on the primary objective. We apply the system to imaging a range of biological samples with varied refractive indices. Combined with tiled acquisition, image stitching and multi-view image fusion, the microscope enables multicolour imaging of mm-wide and [~]250 {micro}m thick optically cleared mouse ovarian cancer and colon tissue samples with subcellular resolution. We also image a whole Drosophila melanogaster fruit fly brain. The system offers a platform for fast and high-resolution, multicolour volumetric imaging across spatial scales, integrated on a commercially available microscope frame.

biophysics↗

bioRxiv2024

A half-centre oscillator encodes sleep pressure

Oscillatory neural dynamics are an inseparable part of mammalian sleep. Characteristic rhythms are associated with different sleep stages and variable levels of sleep pressure, but it remains unclear whether these oscillations are passive mirrors or active generators of sleep. Here we report that sleep-control neurons innervating the dorsal fan-shaped body of Drosophila (dFBNs) produce slow-wave activity (SWA) in the delta frequency band (0.2-2 Hz) that is causally linked to sleep. The dFBN ensemble contains rhythmic cells whose membrane voltages oscillate in anti-phase between hyperpolarized DOWN and depolarized UP states releasing bursts of action potentials. The oscillations rely on direct interhemispheric competition of two inhibitory half-centers connected by glutamatergic synapses. Interference with glutamate release from dFBNs disrupts SWA and baseline as well as rebound sleep, while the optogenetic replay of SWA (with the help of intersectional, dFBN-restricted drivers) induces sleep. dFBNs generate SWA throughout the sleep-wake cycle-- despite a mutually antagonistic flip-flop arrangement with arousing dopaminergic neurons--but adjust its power to sleep need via an interplay of sleep history-dependent increases in excitability and homeostatic depression of their efferent synapses, as we demonstrate transcriptionally, structurally, functionally, and with a simple computational model. The oscillatory format permits a durable encoding of sleep pressure over long time scales but requires downstream mechanisms that convert the amplitude-modulated periodic signal into binary sleep-wake states.

neuroscience↗

bioRxiv2024

Mitochondrial origins of the pressure to sleep

To obtain a comprehensive, unbiased view of molecular changes in the brain that may underpin the need for sleep, we have characterized the transcriptomes of single cells isolated from rested and sleep-deprived flies. Transcripts upregulated after sleep deprivation, in sleep-control neurons projecting to the dorsal fan-shaped body (dFBNs) but not ubiquitously in the brain, encode almost exclusively proteins with roles in mitochondrial respiration and ATP synthesis. These gene expression changes are accompanied by mitochondrial fragmentation, enhanced mitophagy, and an increase in the number of contacts between mitochondria and the endoplasmic reticulum, creating conduits for the replenishment of peroxidized lipids. The morphological changes are reversible after recovery sleep and blunted by the installation of an electron overflow in the respiratory chain. Inducing or preventing mitochondrial fission or fusion in dFBNs alters sleep and the electrical properties of sleep-control cells in opposite directions: hyperfused mitochondria increase, whereas fragmented mitochondria decrease, neuronal excitability and sleep. ATP levels in dFBNs rise after enforced waking because of diminished ATP consumption during the arousal-mediated inhibition of these neurons, which predisposes them to heightened oxidative stress. Consistent with this view, uncoupling electron flux from ATP synthesis relieves the pressure to sleep, while exacerbating mismatches between electron supply and ATP demand (by powering ATP synthesis with a light-driven proton pump) promotes sleep. Sleep, like ageing, may be an inescapable consequence of aerobic metabolism.

neuroscience↗