Biology subjects

Sanchez-Gomez, A.

Publications and source records attributed to Sanchez-Gomez, A..

3 recordsLinked to original sources

bioRxiv2025

Phospho-signalling deregulation of the mTOR pathway in fibroblasts from LRRK2 Parkinson s patients

Activating mutations at the leucine-rich repeat kinase 2 (LRRK2) gene are the most frequent genetic cause of Parkinsons Disease (PD). Using in-depth mass-spectrometry, here we analysed the impact of LRRK2 mutations on the proteome and phospho-proteome of skin fibroblasts from a large LRRK2 clinical cohort from Spain. The cohort encompassed G2019S LRRK2-associated PD (L2PD) (n=15), G2019S LRRK2 non-manifesting carriers (L2NMCs) (n=13), idiopathic PD (iPD) (n=12), and control subjects (n=14) (total n=54). The proteome analysis revealed 89 differential proteins in G2019S L2PD (58 down/ 31 up) and 168 in G2019S L2NMCs (127 down / 41 up) compared to controls. Most of these proteome changes involved deficits in proteins related to mitochondrial energy and ribosomal protein synthesis. At the phospho-proteome level, we identified 394 differential phospho-sites in G2019S L2PD (188 hyper / 206 hypo), 367 in G2019S L2NMCs (215 hyper / 152 hypo), and 428 in iPD (214 hyper / 214 hypo) compared with controls. These phospho-proteomic changes included hyper-phosphorylated proteins associated with the mTOR and Rho GTPase pathways. Notably, the top hyper-phosphorylated hit in G2019S carriers was pThr37/46 4E-BP1, a key effector of the mTOR pathway controlling protein synthesis, and this protein was also deregulated in iPD. In summary, our study uncovers peripheral deregulation of mTOR phospho-signalling associated with LRRK2 mutations, which is related to deficits in mitochondrial and ribosomal proteins, and affects converging pathways altered in iPD.

neuroscience↗

bioRxiv2025

The Consortium for Genomic Diversity, Ancestry, and Health in Colombia (CODIGO): building local capacity in genomics, bioinformatics, and precision medicine

The Consortium for Genomic Diversity, Ancestry, and Health in Colombia (CODIGO) aims to build a community of Colombian researchers in support of local capacity in genomics, bioinformatics, and precision health. Here, we present the first CODIGO data release and the consortium web platform, including annotations for more than 95 million genetic variants from 1,441 samples representing 14 populations from across the country. CODIGO samples show a wide range of African (16.7%), European (50.6%), and Indigenous American (32.8%) genetic ancestry components, with five distinct ancestry clusters. Thousands of ancestry-enriched variants, with divergent allele frequencies across clusters, show pharmacogenomic and clinical genetic associations. Examples include African ancestry-enriched variants associated with fast metabolism of the immunosuppressive drug tacrolimus and malaria resistance and European ancestry-enriched variants associated with nicotine dependence and hereditary hemochromatosis. CODIGO reveals the nexus between ancestry and health in Colombia and underscores the utility of collaborative genome sequence analysis efforts.

genomics↗

bioRxiv2020

Loss of Kinesin-8 improves the robustness of the acentrosomal spindle

Chromosome segregation in female meiosis is inherently error-prone, among other reasons, because the acentrosomal spindle assembles and segregates chromosomes without the major microtubule-organizing centres in eukaryotes, the centrosomes, which causes high rate of aneuploidy. The molecular basis underlying formation of acentrosomal spindles is not as well-understood as that of centrosomal spindles and, consequently, strategies to improve spindle robustness are difficult to address. Recently, we noticed during fission yeast meiosis the formation of unexpected microtubules arrays, independent of the spindle pole bodies (yeast centrosome equivalent), with ability to segregate chromosomes. Here, we establish such microtubules formation as bonafide self-assembled spindles that depend on the canonical microtubule crosslinker Ase1/PRC1, share similar structural polarity and harbour the microtubule polymerase Alp14/XMAP215, while being independent of conventional {gamma}-tubulin-mediated nucleation mechanisms. Remarkably, acentrosomal spindle robustness was reinforced by deletion of the Klp6/Kinesin-8, which, consequently, led to a reduced meiotic aneuploidy rate. Our results enlighten the molecular basis of acentrosomal meiosis, a crucial event in understanding gametogenesis.

cell biology↗