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Sakagiannis, P. P.

Publications and source records attributed to Sakagiannis, P. P..

2 recordsLinked to original sources

Larvaworld : A behavioral simulation and analysis platform for Drosophila larva

Behavioral modeling supports theory building and evaluation across disciplines. Leveraging advances in motion-tracking and computational tools, we present a virtual laboratory for Drosophila larvae that integrates agent-based modeling with multiscale neural control and supports analysis of both simulated and experimental data. Virtual larvae are implemented as 2D agents capable of realistic locomotion, guided by multimodal sensory input and constrained by a dynamic energy-budget model that balances exploration and exploitation. Each agent is organized as a hierarchical, behavior-based control system comprising three layers: low-level locomotion, optionally incorporating neuromechanical models; mid-level sensory processing; and high-level behavioral adaptation. Neural control models can range from simple linear transfer models to rate-based or spiking neural network models, e.g. to accomodate associative learning. Simulations operate across sub-millisecond neuronal dynamics, sub-second closed-loop behavior, and circadian-scale metabolic regulation. Users can configure both larval models and virtual environments, including sensory landscapes, nutrient sources, and physical arenas. Real-time visualization is integrated into the simulation and analysis pipeline, which also allows for standardized processing of motion-tracking data from real experiments. Distributed as an open-source Python package, the platform includes tutorial experiments to support accessibility, customization, and use in both research and education. Author summaryLarvaworld was developed to address two key challenges in behavioral neuroscience and computational modeling. First, it responds to the growing call for closer collaboration between experimentalists and modelers by providing a shared platform -a virtual laboratory-where experimental data analysis and behavioral modeling can be seamlessly integrated. By standardizing dataset formats and ensuring identical, unbiased analysis pipelines for experimental and simulated data, Larvaworld facilitates methodological consistency and enables rigorous model evaluation. Second, it aims to bridge a long-standing gap in theory building and computational modeling at the level of the individual behaving organism. Historically, neuroscience has focused on sub-individual processes, while ecology has concentrated on supra-individual dynamics, resulting in discontinuities among the respective modeling approaches. Recent advances, however, have begun to align these fields, with neuroscience incorporating slower homeostatic processes and ecology integrating faster neurally-mediated mechanisms. Larvaworld boosts this convergence by adopting a nested, multi-timescale modeling approach, thus achieving behavioral regulation within the normative homeostatic constraints as these dynamically unfold during larval development. By combining established modeling paradigms from neuroscience and ecology, it provides a novel and flexible platform for studying behavior at the level of the individual organism, promoting cross-disciplinary insights and advancing computational neuroethology [1].

neuroscience↗

A realistic locomotory model of Drosophila larva for behavioral simulations.

The Drosophila larva is extensively used as model organism in neuroethological studies where precise behavioral tracking enables the statistical analysis of individual and population-level behavioral metrics that can inform mathematical models of larval behavior. Here, we propose a hierarchical model architecture comprising three layers to facilitate modular model construction, closed-loop simulations, and direct comparisons between empirical and simulated data. At the motor layer, the autonomous locomotory model is capable of performing exploration. Based on novel kinematic analyses our model features intermittent forward crawling that is phasically coupled to lateral bending. At the second layer, navigation is achieved via active sensing in a simulated environment and top-down modulation of locomotion. At the top layer, behavioral adaptation entails associative learning. We evaluate virtual larval behavior across agent-based simulations of autonomous free exploration, chemotaxis, and odor preference testing. Our behavioral architecture is ideally suited for the modular combination of neuromechanical, neural or mere statistical model components, facilitating their evaluation, comparison, extension and integration into multifunctional control architectures.

neuroscience↗