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Saha, S. K.

Publications and source records attributed to Saha, S. K..

7 recordsLinked to original sources

Exploring the impact of intraspecific interaction between sibling colonies of Bacillus cereus MSM-S1 in the absence and presence of antibiotics

Bacillus cereus is a spore-forming pathogen and food contaminant that can survive in hostile environments through different survival strategies. As part of survival, B. cereus may also engage in intra- or interspecific interactions that shape its community structure and stress responses, enabling its persistence under unfavourable conditions. The present study explored intraspecific interactions, at the cell and molecular levels, between two sibling colonies of Bacillus cereus MSM-S1 grown through swarming adjacently on nutrient agar in the absence and presence of gentamicin. While growing alone, gentamicin altered the symmetrical colony morphology of B. cereus MSM-S1, which was associated with cell elongation, decreased flagellation and increased expression of the toxin gene nheA. During interaction, both in the absence and presence of gentamicin, the motility of sibling colonies towards each other was restricted, forming a distinct line/zone of demarcation between the colonies. Microscopic analysis at different time points (day 3, 5 and 7) revealed progressive changes in the swirling arrangement of cells at the interaction zone. In the absence of gentamicin, cells became jammed at the interacting front by day 7, whereas this effect was not observed in the presence of gentamicin on day 7. Cells at the interacting zone underwent gradual sporulation; notably, sporulation was less in the presence of gentamicin. Further analysis suggested that nutrient limitation was the major contributory factor for the formation of the zone of no growth between the interacting colonies. Moreover, the expression of quorum-sensing genes was down-regulated in cells at the interacting zone without gentamicin, but notably, upregulated in the presence of gentamicin. The expression of chemotaxis regulator gene, cheY, was also upregulated in interacting zone cells both in the absence and presence of gentamicin. In addition, increased expression of the global transcriptional regulator codY in the interacting zone under both conditions suggested its involvement in metabolic regulation during sibling colony interaction. The findings highlight modulated quorum sensing and sporulation as adaptive mechanisms in Bacillus cereus MSM-S1 to cope with external stress imposed by nutrient limitations caused by the growth of sibling colonies, whereas, cell elongation and toxin production together is a preferred survival strategy for a growing MSM-S1 colony when stress is imposed by gentamicin as antibiotic but sufficient nutrient is available.

microbiology↗

A low-cost rpoB-based multiplex MAMA PCR for differentiation of the Klebsiella pneumoniae species complex

The Klebsiella pneumoniae species complex (KpSC) is a clinically important group of closely related pathogens associated with invasive infections. The complex comprises seven closely related members, which are often reported as K. pneumoniae, particularly in resource-limited settings. Accurate differentiation of KpSC members remains challenging because routine laboratory methods lack sufficient resolution, and approaches like mass spectrometry and whole genome sequencing (WGS) are not widely available. Consequently, the epidemiology and clinical significance of non-K. pneumoniae members of the KpSC remain underrecognized. We developed a conventional multiplex mismatch amplification mutation assay (MAMA) PCR targeting species- and subspecies-specific single-nucleotide polymorphisms in the housekeeping gene rpoB, with six primer sets for differentiation of common KpSC members. The assay was validated against 49 genomically characterized clinical isolates, after which 179 wastewater-derived isolates provisionally identified as Klebsiella spp. by standard microbiological methods were tested. Of these, 174 were assigned to specific KpSC members by the assay, while 5 produced inconclusive amplification patterns. A subset of 16 environmental isolates was selected for WGS, including four of the five inconclusive isolates. All environmental isolates with interpretable MAMA PCR patterns were concordant with WGS. The four inconclusive environmental isolates were identified as Enterobacter spp. Overall, comparison of MAMA PCR with WGS showed 100% sensitivity and 100% specificity for all tested targets, and the total cost was approximately US$1. This rpoB-based multiplex MAMA PCR provides a simple, accurate, and low-cost approach for differentiation of KpSC members in routine laboratories and may support improved identification and surveillance in resource-limited settings. ImportanceThe Klebsiella pneumoniae species complex (KpSC) has seven members but is often reported as a single organism in routine laboratories, masking clinically and epidemiologically important diversity. As a result, the contribution of non-K. pneumoniae KpSC members to human and environmental microbiology remains poorly defined, especially in low-resource settings. We developed a conventional multiplex mismatch amplification mutation assay (MAMA) PCR based on discriminatory rpoB single nucleotide polymorphisms for differentiation of common KpSC members using standard PCR and agarose gel electrophoresis. The assay demonstrated 100% sensitivity and 100% specificity against whole-genome sequencing and excluded non-Klebsiella environmental isolates initially identified as Klebsiella pneumoniae using standard microbiological procedures. With an estimated per-test cost of about US$1, this method offers an affordable and scalable option for laboratories seeking more accurate KpSC identification and improved surveillance.

microbiology↗

Antimicrobial and Biofilm-Inhibitory Potential of Green Synthesized Silver Nanoparticles from Lantana camara against Pseudomonas aeruginosa

BackgroundEmerging antimicrobial resistance poses serious threat to human well-being. Current therapeutics often fail to treat bacterial infections as pathogenic bacteria often attach to various surfaces and form biofilm. One such pathogen, Pseudomonas aeruginosa, can form biofilm for its survival in the presence of antibacterial agents. This study aimed to evaluate the antibacterial, antibiofilm, and mechanistic activities of Lantana camara leaf extract mediated silver nanoparticles (LCLE-Ag NPs) against Pseudomonas aeruginosa, where the extract contributes for the reduction of Ag+ to Ag0. MethodsLCLE-Ag NPs were synthesized and characterized by using UV visible spectroscopy, dynamic light scattering, and electron microscopy. Antibacterial and antibiofilm activities of the synthesized NPs were assessed against P. aeruginosa isolates KPW.1-S1 and HRW.1-S3. Extracellular polysaccharides (EPS), and extracellular DNA (eDNA) and reactive oxygen species (ROS) generation were visualized using epifluorescence microscopy. The ability of the nanoparticles to eradicate preformed biofilm was also evaluated. The expressions of quorum-sensing genes were analyzed using semi quantitative polymerase chain reaction. Cytotoxicity was tested on human kidney epithelial-like cells. ResultsThe synthesized LCLE-Ag NPs displayed an absorption peak at 416 nm and a size range of 30 to 35 nm. They exhibited significant antibacterial and antibiofilm activities correlating with decreased EPS and eDNA levels. LCLE-Ag NPs effectively disrupted both preformed and antibiotic-induced biofilms and such activities were found to be associated with increased ROS levels and decrease in lasI and pqsA expression. Cytotoxicity assays indicated no significant toxicity at effective concentrations. ConclusionsLCLE-Ag NPs displayed promising antibacterial and antibiofilm activities against P. aeruginosa, acting through biofilm matrix disruption, ROS generation, and quorum-sensing inhibition.

microbiology↗

Differentiating the mechanism of antibacterial activities of nano and ionic copper by using Escherichia coli as a model microorganism

In this study, the effect of polymer stabilized copper nanoparticles and ionic copper on the growth, nucleic acid pool, reactive oxygen species generation, cell surface lipopolysaccharide, outer membrane protein profile and cell surface morphology of Escherichia coli were investigated. Copper nanoparticles exhibited a superior bactericidal activity associated with increased nucleic acid degradation, reactive oxygen species generation and change in the outer membrane protein profile compared to ionic copper in a concentration dependent manner. Although, there was no change in the outer membrane lipopolysaccharide profile, inductively coupled plasma mass spectrometry analysis of nano- and ionic copper treated Escherichia coli cells revealed that more amounts of copper nanoparticles were transported inside the cells compared to the ionic counterpart up to 500 M concentrations. Interestingly, copper nanoparticles at 1000 M concentration could induce membrane pit formation whereas ionic copper failed to exhibit such property under the same experimental conditions. Based on these observations it can be concluded that both nano- and ionic copper exert their antibacterial action through the generation of reactive oxygen species, degradation of cellular nucleic acids and alteration of membrane protein profile, but with a significant difference in the effective concentration range due to the differential cellular transport.

microbiology↗

Antibiotic induced biofilm formations in Pseudomonas aeruginosa strains KPW.1-S1 and HRW.1-S3 are associated with increased production of eDNA and exoproteins, increased ROS generation, and increased cell surface hydrophobicity

Pseudomonas aeruginosa is a medically important bacteria due to its ability to form biofilm and is also an opportunistic pathogen. Pseudomonas aeruginosa has the intrinsic ability to form biofilm as one of the defense mechanisms for their survival. The fact that it can form biofilms on various medical implants makes it more harmful clinically. Although various antibiotics are used to treat Pseudomonas aeruginosa infections, previous studies have shown that sub-MIC levels of antibiotics cause biofilm formation in this type of bacteria. The present study thus deals with the effect of the aminoglycoside antibiotic gentamicin on the biofilm dynamics of two Pseudomonas aeruginosa strains KPW.1-S1 and HRW.1-S3. Biofilm formation was seen to be increasing with increased gentamicin concentrations in growth media. Confocal laser scanning microscopy and scanning electron microscopy accompanied with other biochemical tests deduced that biofilm-forming components like exoproteins, eDNA, and exolipids as exopolymeric substances in Pseudomonas aeruginosa biofilms were increased in the presence of gentamicin. An increase in reactive oxygen species generation along with increased cell surface hydrophobicity was also seen in both strains when treated with gentamicin. The observed increase in the adherence of the cells accompanied by an increase in exopolymeric substances, eDNA, and exolipids may have largely contributed to the increased biofilm production by the Pseudomonas aeruginosa strains KPW.1-S1 and HRW.1-S3 under the stress of the antibiotic treatment.

microbiology↗

Expression of GRINA Correlates with Prognosis in Human Cancers: A Pan-cancer Analysis

GRINA is an emerging target for cancer therapy. However, the role of GRINA expression and its correlation with cancer patient survival has not been comprehensively studied. Here, we found that mRNA and protein expression of GRINA was upregulated in breast, colon, gastric, and prostate cancers and negatively correlated with patient survival. Also, the upregulation of GRINA expression is associated with hypomethylation of its promoter region. Our GRINA-miRNAs network analysis revealed potential regulatory miRNAs regulating the GRINA expression and its downstream pathways. Next, functional enrichment and pathway analysis of genes commonly co-express with GRINA in breast, colon, gastric, and prostate cancers revealed GRINA regulatory pathways. Concurrently, our upstream regulator analysis revealed possible kinases, transcription factors, and proteins that may potentially regulate GRINA. Overall, this study demonstrates the prognostic significance of GRINA expression and identifies potential regulatory mechanisms, which might have significant implications in targeted therapies for human cancers.

cancer biology↗

A novel mosaic tetracycline resistance gene tet(S/M) detected in a multidrug-resistant pneumococcal CC230 lineage that underwent capsular switching in South Africa

SynopsisO_ST_ABSObjectiveC_ST_ABSWe reported a novel tetracycline-resistant gene in Streptococcus pneumoniae and investigated its temporal spread in relation to nationwide clinical interventions.\n\nMethodsWe whole genome sequenced 12,254 pneumococcal isolates from twenty-nine countries on an Illumina HiSeq Sequencer. Serotypes, sequence types and antibiotic resistance were inferred from genomes. Phylogeny was built based on single-nucleotide variants. Temporal changes of spread were reconstructed using a birth-death model.\n\nResultsWe identified tet(S/M) in 131 pneumococcal isolates, 97 (74%) caused invasive pneumococcal diseases among young children (59% HIV-positive, where HIV status was available) in South Africa. A majority of tet(S/M)-positive isolates (129/131) belong to clonal complex (CC)230. A global phylogeny of CC230 (n=389) revealed that tet(S/M)-positive isolates formed a sub-lineage that exhibited multidrug-resistance. Using the genomic data and a birth-death model, we detected an unrecognised outbreak of this sub-lineage in South Africa between 2000 and 2004 with an expected secondary infections (R) of ~2.5. R declined to ~1.0 in 2005 and <1.0 in 2012. The declining epidemic coincided and could be related to the nationwide implementation of anti-retroviral treatment (ART) for HIV-infected individuals in 2004 and PCVs in late 2000s. Capsular switching from vaccine serotype 14 to non-vaccine serotype 23A was observed within the sub-lineage.\n\nConclusionsThe prevalence of tet(S/M) in pneumococci was low and its dissemination was due to an unrecognised outbreak of CC230 in South Africa prior to ART and PCVs. However, capsular switching in this multidrug-resistant sub-lineage highlighted its potential to continue to cause disease in the post-PCV13 era.

microbiology↗