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Sabino, V.

Publications and source records attributed to Sabino, V..

2 recordsLinked to original sources

A Bidomain Boundary Element-Cable Method for Modeling Neuronal Responses to Electric Fields

Objective: Extracellular electric fields critically influence neural activity through both exogenous neuromodulation and endogenous ephaptic coupling. While conventional cable models efficiently simulate membrane dynamics, they fail to capture bidirectional, field-mediated interactions self-consistently, and fully coupled volumetric methods require computationally prohibitive 3D meshing. We present Cable-BEM, a hybrid wire-kernel bidomain boundary element method designed to resolve these limitations. Approach: By analytically integrating boundary integral kernels around cylindrical neuronal compartments, Cable-BEM fully couples intracellular, extracellular, and membrane dynamics while strictly retaining the highly efficient 1D degrees of freedom of traditional cable equations. The system is advanced using a semi-implicit Crank-Nicolson scheme. To overcome the dense nature of the resulting integral operators, we implement an Adaptive Cross Approximation (ACA) and Hierarchical Off-Diagonal Low-Rank (HODLR) compression scheme. Main result: The solver was rigorously validated against full-surface bidomain boundary element method (BEM) reference implementations, demonstrating tight agreement in activation thresholds (within 1.3% relative error) across diverse stimulation geometries. The ACA-HODLR compression scheme achieved substantial memory footprint reductions-by a factor of up to 4.6 for large 225-cell networks- without sacrificing numerical accuracy. Furthermore, we utilized the framework to resolve subtle, distance-dependent ephaptic interactions, successfully demonstrating the progressive phase synchronization of biophysically realistic, multi-compartment Purkinje cells. Significance: Cable-BEM provides a computationally scalable, mesh-free framework that establishes a powerful and practical foundation for investigating complex field-mediated phenomena in large-scale, multicellular neuronal networks.

biophysics↗

Modeling Pyramidal Neurons Using Bidomain BEM and Hierarchical Matrix Approximation

Electromagnetic brain stimulation uses electrodes or coils to induce electric fields (E-fields) in the brain and affect its activity. Our understanding of the precise effects of the device-induced E-fields on neural activity is limited. In this paper, we present a novel bidomain boundary integral equation-based method that enables the modeling of fully coupled E-fields from both neurons and stimulation devices. This boundary element approach is accelerated using fast direct solvers to allow for the analysis of realistic scenarios. We present examples, indicating the ability of our solver to analyze rat L2/3 pyramidal neurons derived from the Blue Brain Project. A comprehensive analysis shows that this method can be easily extended to model a group of neurons that were previously computationally intractable.

neuroscience↗