Rutkowski, R. | bioRxiv Science

bioRxiv2025

Avian promiscuity in the last European primeval forest

Primeval forests provide a reference baseline to understand the origins and evolution of mating systems because they offer a unique, undisturbed environment where ecological interactions and natural selection play out in their original context. We established rates of extra-pair paternity (EPP) for two bird species referential to evolutionary ecology: blue tits (Cyanistes caeruleus) and great tits (Parus major), breeding in natural cavities in Biaowie[z]a National Park, the sole remnant of European lowland primeval forests. Genotype-by-sequencing of 889 blue tits and 1,256 great tits revealed that 48% of blue tit broods and 39% great tit broods were of mixed paternity, with 15% blue tit and 14% great tit nestlings not sired by their social father. These referential levels align with median values of EPP reported in nestbox studies in secondary and managed forests, suggesting that certain reproductive strategies are advantageous across diverse environments. Observed promiscuity levels did not affect reproductive success or parental investment, indicating no or limited adaptive value for promiscuity in the context of a primeval forest ecosystem. Our study underscores how primeval habitats provide unparalleled insights into natural selection and mating strategies in wild populations, highlighting the stability and resilience of these strategies across different environmental contexts.

ecology↗

bioRxiv2024

Evolutionary dynamics of pro-inflammatory caspases in primates and rodents

Caspase-1 and related proteases are key players in inflammation and innate immunity. Here, we characterize the evolutionary history of caspase-1 and its close relatives across 19 primates and 21 rodents, focusing on differences that may cause discrepancies between humans and animal studies. While caspase-1 has been retained in all these taxa, other members of the caspase-1 subfamily (caspase-4, -5, -11, -12, and CARD16, 17, and 18) each have unique evolutionary trajectories. Caspase-4 is found across simian primates, whereas we identified multiple pseudogenization and gene loss events in caspase-5, caspase-11, and the CARDs. Because caspases-4 and -11 are both key players in the non-canonical inflammasome pathway, we expected that these proteins would be likely to evolve rapidly. Instead, we found that these two proteins are largely conserved, whereas caspase-4s close paralog, caspase-5, showed significant indications of positive selection, as did primate caspase-1. Caspase-12 is a non-functional pseudogene in humans. We find this extends across most primates, although many rodents and some primates retain an intact, and likely functional, caspase-12. In mouse laboratory lines, we found that 50% of common strains carry non-synonymous variants that may impact the functions of caspase-11 and -12, and therefore recommend specific strains to be used (and avoided). Finally, unlike rodents, primate caspases have undergone repeated rounds of gene conversion, duplication, and loss leading to a highly dynamic pro-inflammatory caspase repertoire. Thus we uncovered many differences in the evolution of primate and rodent pro-inflammatory caspases, and discuss the potential implications of this history for caspase gene functions.

evolutionary biology↗