Biology subjects

Ruiz-Gonzalez, C.

Publications and source records attributed to Ruiz-Gonzalez, C..

2 recordsLinked to original sources

bioRxiv2020

Ecogenomics of key prokaryotes in the Arctic Ocean

The Arctic Ocean is a key player in the regulation of climate and at the same time is under increasing pressure as a result of climate change. Predicting the future of this ecosystem requires understanding of the responses of Arctic microorganisms to environmental change, as they are the main drivers of global biogeochemical cycles. However, little is known about the ecology and metabolic potential of active Arctic microbes. Here, we reconstructed a total of 3,550 metagenomic bins from 41 seawater metagenomes collected as part of the Tara Oceans expedition, covering five different Arctic Ocean regions as well as the sub-Arctic North Atlantic Ocean and including various depths and different seasons (spring to autumn). Of these bins, 530 could be classified as Metagenome Assembled Genomes (MAGs) and over 75% of them represented novel species. We describe their habitat range and environmental preferences, as well as their metabolic capabilities, building the most comprehensive dataset of uncultured bacterial and archaeal genomes from the Arctic Ocean to date. We found a prevalence of mixotrophs, while chemolithoautotrophs were mostly present in the mesopelagic Arctic Ocean during spring and autumn. Finally, the catalogue of Arctic MAGs was complemented with metagenomes and metatranscriptomes from the global ocean to identify the most active MAGs present exclusively in polar metagenomes. These polar MAGs, which display a range of metabolic strategies, might represent Arctic sentinels of climate change and should be considered in prospective studies of the future state of the Arctic Ocean.

ecology↗

bioRxiv2019

Bacterioplankton dynamics driven by inter-annual variation in phytoplankton spring bloom communities in the Baltic Sea

In the Baltic Sea, climate change has caused shifts in the phytoplankton spring bloom communities with co-occurrence of diatoms and dinoflagellates. Such changes likely affect the composition and function of associated bacterioplankton, key members of the carbon cycling, although the actual effects are unknown. To understand how changes in phytoplankton impact on bacterioplankton composition and function, we analysed bacterioplankton communities and their production during different phases of the spring bloom in four consecutive years across the Baltic Sea, and related them to environmental variables. Phytoplankton communities varied largely in composition, modifying the taxonomic structure and richness of the associated bacterioplankton assemblages. In presence of certain diatoms (Achnanthes taeniata, Skeletonema costatum and Chaetoceros spp.), bacterial production and diversity were high and with more relative abundance of Flavobacteriia, Gammaproteobacteria and Betaproteobacteria. This bacterial community structure correlated positively with high diatom biomass and with high bacterial production rates. In contrast, during dinoflagellate-dominated blooms or when the diatom Thalassiosira baltica was abundant, both bacterial production rates and diversity were low, with bacterial communities dominated by SAR11 and Rhodobacteraceae. Our results demonstrate that, changes in the phytoplankton spring bloom will have profound consequences on bacterial community structure and their role in carbon cycling.

microbiology↗