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Rubino, A.

Publications and source records attributed to Rubino, A..

7 recordsLinked to original sources

Reversible DNA condensation drives natural transformation

Natural transformation drives the spread of antibiotic resistance among bacteria. The DNA receptor ComEA is essential for transporting external transforming DNA into the periplasm by an unknown mechanism. Here, single-molecule optical tweezers and electron microscopy approaches show that Geobacillus stearothermophilus ComEA forms dynamic oligomers on DNA that can switch between two conformations depending on local concentration. When ComEA sparsely decorates DNA, it forms bridging oligomers that condense the DNA to generate sub-pN pulling forces. When ComEA more fully decorates DNA, it forms non-bridging oligomers that decondense DNA and cannot generate force. Mutating ComEA to favor either bridging or non-bridging conformations causes transformation deficiency in Bacillus subtilis, meaning condensation and decondensation are separately essential. Our results show that ComEA reversibly condenses DNA during natural transformation, first producing force to pull DNA into the periplasm and then abating force production to promote transport into the cytoplasm.

biophysics↗

A canonical cortical electronic circuit for neuromorphic intelligence

Cortical microcircuits play a fundamental role in natural intelligence. While they inspired a wide range neural computation models and artificial intelligence algorithms, few attempts have been made to directly emulate them with an electronic computational substrate that uses the same physics of computation. Here we present a heterogeneous canonical microcircuit architecture compatible with analog neuromorphic electronic circuits that faithfully reproduce the properties of real synapses and neurons. The architecture comprises populations of interacting excitatory and inhibitory neurons, disinhibition pathways, and spike-driven multi-compartment dendritic learning mechanisms. By co-designing the computational model with its neuromorphic hardware implementation, we developed a neural processing system that can perform complex signal processing functions, learning, and classification tasks robustly and reliably, despite the inherent variability of the analog circuits, using ultra-low power energy consumption features comparable to those of their biological counterparts. We demonstrate how both the model architecture and its hardware implementation seamlessly capture the hallmarks of neural computation: attractor dynamics, adaptation, winner-take-all behavior, and resilience to variability, within a compact, low-power computing substrate. We validate the models learning performance both from the algorithmic perspective and with detailed electronic circuit simulation experiments and characterize its robustness to noise. Our results illustrate how local, biologically plausible rules for plasticity and gating can overcome challenges like catastrophic forgetting and parameter variability, enabling effective always-on adaptation. Beyond offering insights into the nature of computation in neural systems, our approach introduces a foundation for ultra-low power, fault-tolerant architectures capable of complex signal processing at the edge. By embracing -rather than mitigating-variability, these neuromorphic circuits exhibit a powerful synergy with emerging memory technologies, suggesting a new paradigm for sophisticated "in-memory" computing. Through such tight integration of neuroscience principles and analog circuit design, we pave the way toward a class of brain-inspired processors that can learn continuously and respond dynamically to real-world inputs.

neuroscience↗

Simultaneous stereo-EEG and high-density scalp EEG recordings to study the effects of intracerebral stimulation parameters

BackgroundCortico-cortical evoked potentials (CCEPs) recorded by stereo-electroencephalography (SEEG) are a valuable clinical tool to investigate brain reactivity and effective connectivity. However, these invasive recordings are spatially sparse since they depend on clinical needs. This sparsity hampers systematic comparisons across-subjects, the detection of the whole-brain spatiotemporal properties of CCEPs, as well as their relationships with classic sensory evoked potentials. ObjectiveTo demonstrate that CCEPs recorded by high-density electroencephalography (hd-EEG) are sensitive to changes in stimulation parameters and compensate for the limitations typical of invasive recordings. MethodsSEEG and hd-EEG activities were simultaneously recorded during SPES in drug-resistant epileptic patients (N=36). Changes in stimulation parameters encompassed physical (pulse intensity and width), geometrical (angle and position with respect to white/grey matter) and topological (stimulated cortical area) properties. Differences were assessed by measuring the overall responses and the amplitude of N1 and N2 components of the CCEPs, and by their spectral profiles. ResultsWhile invasive and non-invasive CCEPs were generally correlated, differences in pulse duration, angle and stimulated cortical area were better captured by hd-EEG. Further, hd-EEG responses to SPES reproduced basic features of responses to transcranial magnetic stimulation and showed a much larger amplitude as compared to typical sensory evoked potentials. ConclusionsThe present results show that macroscale hd-EEG recordings are exquisitely sensitive to variations in SPES parameters, including local changes in physical and geometrical stimulus properties, while providing valuable information about whole-brain dynamics. Moreover, the common reference space across subjects represented by hd-EEG may facilitate the construction of a perturbational atlas of effective connectivity. HighlightsO_LICCEPs recorded with hd-EEG and SEEG are correlated. C_LIO_LIhd-EEG recording is highly sensitive to changes in stimulation parameters. C_LIO_LIhd-EEG responses show higher amplitude responses with respect to non-invasive ones. C_LIO_LISimultaneous recordings provide a fixed observation point across subjects. C_LI

neuroscience↗

An in-vivo validation of ESI methods with focal sources

Electrical source imaging (ESI) aims at reconstructing the electrical brain activity from measurements of the electric field on the scalp. Even though the localization of single focal sources should be relatively straightforward, different methods provide diverse solutions due to the different underlying assumptions. Furthermore, their input parameter(s) further affects the solution provided by each method, making localization even more challenging. In addition, validations and comparisons are typically performed either on synthetic data or through post-operative outcomes, in both cases with considerable limitations. We use an in-vivo high-density EEG dataset recorded during intracranial single pulse electrical stimulation, in which the true sources are substantially dipolar and their locations are known. We compare ten different ESI methods under multiple choices of input parameters, to assess the accuracy of the best reconstruction, as well as the impact of the parameters on the localization performance. Best reconstructions often fall within 1 cm from the true source, with more accurate methods outperforming less accurate ones by 1 cm, on average. Expectedly, dipolar methods tend to outperform distributed methods. Sensitivity to input parameters varies widely between methods. Depth weighting played no role for three out of six methods implementing it. In terms of regularization parameters, for several distributed methods SNR=1 unexpectedly turned out to be the best choice among the tested ones. Our data show similar levels of accuracy of ESI techniques when applied to "conventional" (32 channels) and dense (64, 128, 256 channels) EEG recordings. Overall findings reinforce the importance that ESI may have in the clinical context, especially when applied to identify the surgical target in potential candidates for epilepsy surgery.

neuroscience↗

Fast oscillations localize the epileptogenic zone: an electrical source imaging study using high-density electroencephalography

ObjectiveFast Oscillations (FO) >40 Hz are a promising biomarker of the epileptogenic zone (EZ). Evidence using scalp electroencephalography (EEG) remains scarce. We assessed if electrical source imaging of FO using 256-channel high-density EEG (HD-EEG) is useful for EZ identification. MethodsWe analyzed HD-EEG recordings of 10 focal drug-resistant epilepsy patients with seizure-free postsurgical outcome. We marked FO candidate events at the time of epileptic spikes and verified them by screening for an isolated peak in the time-frequency plot. We performed electrical source imaging of spikes and FO within the Maximum Entropy of the Mean framework. Source localization maps were validated against the surgical cavity. ResultsWe identified FO in five out of 10 patients who had a superficial or intermediate deep generator. The maximum of the FO maps was localized inside the cavity in all patients (100%). Analysis with a reduced electrode coverage using the 10-10 and 10-20 system showed a decreased localization accuracy of 60% and 40% respectively. ConclusionsFO recorded with HD-EEG localize the EZ. HD-EEG is better suited to detect and localize FO than conventional EEG approaches. SignificanceThis study acts as proof-of-concept that FO localization using 256-channel HD-EEG is a viable marker of the EZ. Highlights- Fast oscillations > 40Hz are able to correctly localize the epileptogenic zone. - HD-EEG is superior in detection and localization of fast oscillations compared to conventional EEG approaches. - Presence of fast oscillations on the scalp might point to a superficial epileptic generator.

neuroscience↗

Simultaneous human intracerebral stimulation and HD-EEG: ground-truth for source localization methods

Precisely localizing the sources of brain activity as recorded by EEG is a fundamental procedure and a major challenge for both research and clinical practice. Even though many methods and algorithms have been proposed, their relative advantages and limitations are still not well established. Moreover, these methods involve tuning multiple parameters, for which no principled way of selection exists yet. These uncertainties are emphasized due to the lack of ground-truth for their validation and testing. Here we provide the first open dataset that comprises EEG recorded electrical activity originating from precisely known locations inside the brain of living humans. High-density EEG was recorded as single-pulse biphasic currents were delivered at intensities ranging from 0.1 to 5 mA through stereotactically implanted electrodes in diverse brain regions during pre-surgical evaluation of patients with drug-resistant epilepsy. The uses of this dataset range from the estimation of in vivo tissue conductivity to the development, validation and testing of forward and inverse solution methods.

neuroscience↗

Long-range phase synchronization of high-gamma activity in human cortex

Inter-areal synchronization of neuronal oscillations below 100 Hz is ubiquitous in cortical circuitry and thought to regulate neuronal communication. In contrast, faster activities are generally considered to be exclusively local-circuit phenomena. We show with human intracerebral recordings that 100-300 Hz high-gamma activity (HGA) may be synchronized between widely distributed regions. HGA synchronization was not attributable to artefacts or to epileptic pathophysiology. Instead, HGA synchronization exhibited a reliable cortical connectivity and community structures, and a laminar profile opposite to that of lower frequencies. Importantly, HGA synchronization among functional brain systems during non-REM sleep was distinct from that in resting state. Moreover, HGA synchronization was transiently enhanced for correctly inhibited responses in a Go/NoGo task. These findings show that HGA synchronization constitutes a new, functionally significant form of neuronal spike-timing relationships in brain activity. We suggest that HGA synchronization reflects the temporal microstructure of spiking-based neuronal communication per se in cortical circuits.

neuroscience↗