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Roy, C. S.

Publications and source records attributed to Roy, C. S..

2 recordsLinked to original sources

Perturbations in fumarate levels in Plasmodium berghei leads to cysteine succination and impairs ookinete formation

The TCA cycle intermediates comprise 8 carboxylic acids of which only fumarate has unsaturated carbons rendering it capable of electrophilic addition to cysteine thiols. Accumulation of fumarate due to loss of function of fumarate hydratase converts it into a powerful driver of cancer and therefore is classified as an oncometabolite. We have examined the consequences of perturbing the metabolism of fumarate and its product, malate, on Plasmodium berghei development across erythrocytic and early insect stages. Our studies on P. berghei lines lacking the genes fh and mqo, coding for the enzymes fumarate hydratase (FH) and malate quinone oxidoreductase (MQO), respectively as well as dtc and ogc coding for the transporters dicarboxylate-tricarboxylate carrier (DTC) and citrate-oxoglutarate carrier (OGC), show dramatic impairment in ookinete formation, while gametocytes and erythrocytic asexual stages remain largely unaffected. Comparative metabolomic analysis of gametocytes revealed that elevated fumarate levels in the knockouts led to succination of glutathione, possibly resulting in oxidative stress. The increased levels of the M+5 isotopologue of inosine monophosphate in the knockout gametocytes, observed in isotope tracer experiments, suggest enhanced ribose-5-phosphate and NADPH production through the pentose phosphate pathway, with the latter potentially mitigating elevated oxidative stress. The isotope tracer studies also informed that the P. berghei DTC is a transporter of malate and fumarate and OGC, a transporter of fumarate. The impaired ookinete formation arising from cysteine succination underscores the potential for developing transmission-blocking agents through selective inhibition of class I parasite FH which is distinct from its class II human counterpart. Significance statementMetabolic requirements of Plasmodium that lives across two hosts, traversing developmental stages with different rates of growth, are highly varied. Previous studies have established the non-essentiality of the TCA cycle genes for the erythrocytic asexual stages. Our studies show that knockout of genes involved in fumarate and malate metabolism, and transporters involved in anaplerosis, impairs development of the mosquito-stage, ookinete, with the gametocytes of the knockout lines exhibiting elevated levels of fumarate. The accumulation of succinated glutathione, formed via Michael addition of fumarate to the cysteinyl thiol group and leading to oxidative stress, is probably the leading cause of impairment in ookinete development.

biochemistry↗

Insights into the mechanism of succinimide formation in an archaeal glutaminase.

Succinimide (SNN), an intermediate formed during asparaginyl deamidation or aspartyl dehydration in proteins, is generally hydrolysis-prone, leading to isomerization to L/D /{beta}-aspartyl residue, with the latter being considered deleterious to protein structure and function. An unusually stable SNN-mediated conformational rigidity through restriction of the backbone dihedral angle, {psi}, enhances the thermostability of glutamine amidotransferase (GATase) from Methanocaldococcus jannaschii (Mj). Although several structural features involved in maintaining a stable SNN and imparting SNN-mediated thermostability have been identified in MjGATase, the residues in the protein that catalyse the rapid and complete conversion of Asn109 to SNN remain unknown. Here, we investigated several site-directed mutants of MjGATase for their ability to retain Asn109 side chain in the unmodified form. Mass spectrometric analysis of 10 single mutants enabled the identification of residues that impacted the proportion of SNN and Asn population in the protein sample. This led to the generation of two double mutants that retained intact Asn109 side chain as observed in the mass spectra and crystal structures. These mutants with intact Asn residue at position 109, displayed lower thermal stability than the protein with the SNN modification. Further understanding of the deprotonation mechanism was addressed using QM/MM MD metadynamics simulations. HighlightsO_LIStable succinimide (SNN) arising from deamidation of Asn109 residue imparts hyperthermostability to MjGATase. C_LIO_LIExamination of the structure of MjGATase suggests neighbouring residues playing possible roles in deamidation and cyclization. C_LIO_LIExamination by LC-MS of single site-directed mutants of residues contacting SNN revealed varied levels of intact Asn109 enabling generation of double mutants with complete absence of deamidation. C_LIO_LIPresence of intact Asn109 confirmed by X-ray crystallography highlights the role of Y158, D110, and K151 in mediating SNN formation. C_LIO_LIQM/MM MD metadynamics simulations support experimental findings. C_LI

biochemistry↗