Biology subjects

Rossi, V.

Publications and source records attributed to Rossi, V..

5 recordsLinked to original sources

bioRxiv2025

Separating faces in ARMS metabarcoding improves marine biodiversity monitoring: a comparison across protocols, experimental designs, and photographic surveys

Monitoring marine biodiversity requires approaches that capture its full complexity through space and time. DNA metabarcoding coupled with Autonomous Reef Monitoring Structures (ARMS) is increasingly used for this purpose, yet most applications still pool all sessile fractions and rarely benchmark molecular ouputs against photographic observations. Here, we combined photographic analysis with cytochrome c oxidase I (COI) metabarcoding across ten north-western Mediterranean sites to test, compare, and refine ARMS-based monitoring protocols. We first optimized laboratory procedures (DNA extraction and polymerase choice) and applied the control-driven, replicate-aware VTAM pipeline to minimize false positives and ensure full traceability. We then conducted the first face-by-face comparison of - and {beta}-diversity between imaging and eDNA in which each individual ARMS face was metabarcoded separately rather than pooled. Metabarcoding detected [~]15x higher site-level richness and revealed stronger correlations with geographic distance and environmental gradients, whereas photography provided complementary information on macro-taxa and surface cover. For metabarcoding, processing each face separately yielded much higher richness and markedly stronger {beta}-diversity-distance correlations than with the NOAA pooling protocol, demonstrating that pooling inflates sampling variance resulting in a loss of the ecological signal. Grouping faces into five structural categories offered a more operational alternative while further increasing -diversity and strengthening {beta}-diversity correlations. Overall, our results show that retaining ARMS microhabitat structure is critical for maximizing metabarcoding performance. Using five structural sessile fractions per ARMS combined with a control-driven bioinformatic workflow provides a reproducible, scalable framework for long-term eDNA monitoring and early detection of biodiversity change.

ecology↗

bioRxiv2025

Megafauna show pervasive yet distinct affinity to ocean fronts: the urgent need for adaptive conservation in a warming world

Fronts are ephemeral structures in the ocean that mark the boundaries between water masses of different properties, attracting a wide range of marine organisms, from plankton to whales. Despite their fundamental role in marine ecosystem functioning, the association with biodiversity has mainly focused on single species in regions with high data availability. Here, using multidecadal datasets on dynamical and thermal fronts, satellite tracking, and aerial observations, we assess marine megafauna associations with ocean fronts in the ecologically rich yet highly turbulent Mozambique Channel. We find that a diverse array of species associate with various ocean fronts, although the strength and type of affinity vary across taxa. Downscaled climate change simulations predict significant spatial shifts in front-rich areas by the end of the century. As climate change reshapes ocean front dynamics, adaptive management strategies will be essential to balance conservation and resource use in these critical ecosystems. TeaserOcean fronts attract marine megafauna, but climate change might alter these habitats, requiring adaptive conservation strategies.

ecology↗

bioRxiv2024

Transcontinental patterns in floral pigment frequencies among animal-pollinated species

Flower coloration arises primarily from pigments that serve dual functions: attracting pollinators and mitigating environmental stresses. Among major flower pigment groups, anthocyanins and UV-absorbing phenylpropanoids are particularly notable for fulfilling both roles. Their importance suggests that both pigment types should be widespread in flowers. Here, we analyze the UV-Vis absorption profiles of major floral pigments to assess their potential protective role against UV radiation and demonstrate that this protection is largely confined to UV-absorbing phenylpropanoids. We also analyzed the floral pigment composition of 926 animal-pollinated species from California, southern Spain, and southeastern Brazil. UV-absorbing phenylpropanoids were ubiquitous, while anthocyanins occurred in [~]56% of species, carotenoids in [~]37%, and chlorophylls in [~]17%. Pigment frequencies varied with abiotic and biotic factors, such as light environment in Spain, and pollinator type, such as insect versus hummingbird, in California. Despite these local differences, our findings reveal a consistent regional distribution of floral pigments.

plant biology↗

bioRxiv2024

Robustness of time domain near infrared spectroscopy to variations in skin pigmentation

Recently, skin pigmentation has been shown to affect the performance of pulse oximeters and other light-based techniques like photoacoustic imaging, tissue oximetry, and continuous wave near infrared spectroscopy. Evaluating the robustness to changes in skin pigmentation is therefore essential for the proper use of optical technologies in the clinical scenario. We conducted systematic time domain near infrared spectroscopy measurements on calibrated tissue phantoms and in vivo on volunteers during static and dynamic (i.e., arterial occlusion) measurements. To simulate varying melanosome volume fractions in the skin, we inserted, between the target sample and the measurement probe, thin tissue phantoms made of silicone and nigrosine (skin phantoms). Additionally, we conducted an extensive measurement campaign on a large cohort of pediatric subjects, covering the full spectrum of skin pigmentation. Our findings consistently demonstrate that skin pigmentation has a negligible effect on time domain near infrared spectroscopy results, underscoring the reliability and potential of this emerging technology in diverse clinical settings.

bioengineering↗

bioRxiv2019

Evidence for a unitary structure of spatial cognition beyond general intelligence.

Performance in everyday spatial orientation tasks (e.g. map reading and navigation) has been considered functionally separate from performance on more abstract object-based spatial abilities (e.g. mental rotation and visualization). However, evidence remains scarce and unsystematic. With a novel gamified battery, we assessed six tests of spatial orientation in a virtual environment and examined their association with ten object-based spatial tests, as well as their links to general cognitive ability (g). We further estimated the role of genetic and environmental factors in underlying variation and covariation in these spatial tests. Participants (N = 2,660) were part of the Twins Early Development Study, aged 19 to 22. The 6 tests of spatial orientation clustered into a single Navigation factor that was 64% heritable. Examining the structure of spatial ability across all 16 tests, three factors emerged: Navigation, Object Manipulation and Visualization. These, in turn, loaded strongly onto a general factor of Spatial Ability, which was highly heritable (84%). A large portion (45%) of this high heritability was independent of g. The results from this most comprehensive investigation of spatial abilities to date point towards the existence of a common genetic network that supports all spatial abilities.

genetics↗