Biology subjects

Rossi, I.

Publications and source records attributed to Rossi, I..

4 recordsLinked to original sources

bioRxiv2026

Aiptasia larvae are phenotypically validated as a model of coral bleaching using high-throughput machine-learning image analysis

The sea anemone Aiptasia is a model system for understanding cnidarian loss of symbiotic algae under heat stress (bleaching). While Aiptasia polyps have been widely used to study this process, accurate symbiosis phenotyping grapples with discordant length scales: fine spatial resolution (~100 um) is needed across a whole organism (~5 mm). To address this, we consider small (~100 um), optically transparent Aiptasia larvae as a bleaching model suitable for whole-organism phenotyping by fluorescence microscopy with larvae classified as symbiotic when algae are localized within gastrodermal cells. To expedite phenotyping, we introduce a machine-learning (ML) image-analysis pipeline (SYMPHONY) designed for single-larva resolution analysis of intact larvae. SYMPHONY efficiently identifies the cellular location of internalized algae (accuracy: 79%, precision: 82%, recall: 79%, F1 score: 79%; training dataset composed of 1611 total objects). Additionally, SYMPHONY reports statistically significant larval bleaching under heat stress and corroborates manual phenotyping results, while significantly reducing operator labor from hours to minutes. The combination of the Aiptasia larvae model and the SYMPHONY pipeline aims to accelerate our understanding of symbiosis breakdown.

bioengineering↗

bioRxiv2023

Method for Spatially Confined Stimulation by Retinal Scanning Displays: Are Blind Spots Really Blind?

Conventional displays, such as CRTs and LCDs, are commonly used to present and manipulate visual stimuli in many vision science studies. However, such displays pose difficulties when the goal is to constrain stimulation to specific retinal locations, so as to isolate their contribution to downstream effects. Scattered and refracted light can stimulate unintended areas, contaminating the outcomes. In this investigation, we evaluate a laser-based retinal scanning display for its ability to map and exclusively stimulate the retinal blind spot. This application stimulates melanopsin receptors inside the blind spot, separately from rod and cone photoreceptors, which lie outside the blind spot. This paper covers three experiments: 1. The initial exploratory observations; 2. the examination of pupillary responses, and; 3. the inference of implicit visual perception arising from the blind spot. We aimed to simultaneously validate our technical methods, while increasing our understanding of the role of melanopsin-expressing intrinsically photosensitive retinal ganglion cells (ipRGCs) in vision and implicit visual perception.

neuroscience↗

bioRxiv2023

Extracellular vesicle-localized miR-203 mediates neural crest-placode communication required for trigeminal ganglia formation

While interactions between neural crest and placode cells are critical for the proper formation of the trigeminal ganglion, the mechanisms underlying this process remain largely uncharacterized. Here, we show that the microRNA-(miR)203, whose epigenetic repression is required for neural crest migration, is reactivated in coalescing and condensing trigeminal ganglion cells. Overexpression of miR-203 induces ectopic coalescence of neural crest cells and increases ganglion size. Reciprocally, loss of miR-203 function in placode, but not neural crest, cells perturbs trigeminal ganglion condensation. Demonstrating intercellular communication, overexpression of miR-203 in the neural crest in vitro or in vivo represses a miR-responsive sensor in placode cells. Moreover, neural crest-secreted extracellular vesicles (EVs), visualized using pHluorin-CD63 vector, become incorporated into the cytoplasm of placode cells. Finally, RT-PCR analysis shows that small EVs isolated from condensing trigeminal ganglia are selectively loaded with miR-203. Together, our findings reveal a critical role in vivo for neural crest-placode communication mediated by sEVs and their selective microRNA cargo for proper trigeminal ganglion formation. SIGNIFICANCE STRATEMENTCellular communication during early development plays a critical role. In this study, we demonstrate a unique role for a microRNA in cell-cell communication between the neural crest (NC) and placode cells (PC) during trigeminal ganglia (TG) formation. By utilizing loss and gain of function experiments in vivo, we demonstrate a requirement for miR-203 during cellular condensation to form the TG. We revealed that NC produces extracellular vesicles, selectively carrying miR-203, which is then taken up by the PC and regulates a sensor vector exclusively expressed in the placode. Taken together, our findings reveal a critical role in TG condensation for miR-203, produced by post-migratory NC and taken up by PC via extracellular vesicles.

developmental biology↗

bioRxiv2019

Peptidylarginine Deiminase inhibition abolishesthe production of large extracellular vesicles fromGiardia intestinalis, affecting host-pathogeninteractions by hindering adhesion to host cells.

Giardia intestinalis is an anaerobic protozoan that is an important etiologic agent of inflammation-driven diarrhea worldwide. Although self-limiting, a deep understanding of the factors involved in the pathogenicity that produces the disruption of the intestinal barrier remains unknown. There is evidence that under diverse conditions, the parasite is capable of shedding extracellular vesicles (EVs) which could modulate the physiopathology of giardiasis. Here we describe new insights of G. intestinalis EV production, revealing its capacity to shed two different enriched EV populations (large and small extracellular vesicles) and identified a relevant adhesion function associated only with the larger population. Our work also aimed at assessing the influences of two recently identified inhibitors of EV release in mammalian cells, namely peptidylarginine deiminase (PAD) inhibitor and cannabidiol (CBD), on EV release from Giardia and their putative effects on host-pathogen interactions. PAD-inhibitor Cl-amidine and CBD were both able to effectively reduce EV shedding, the PAD-inhibitor specifically affecting the release of large extracellular vesicles and interfering with in vitro host-pathogen interactions. The strong efficacy of the PAD-inhibitor on Giardia EV release indicates a phylogenetically conserved pathway of PAD-mediated EV release, most likely affecting the Giardia arginine deiminase (GiADI) homolog of mammalian PADs. While there is still much to learn about G. intestinalis interaction with its host, our results suggest that large and small EVs may be differently involved in protozoa communication, and that EV-inhibitor treatment may be a novel strategy for recurrent giardiasis treatment.

microbiology↗