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Rosen, B. R.

Publications and source records attributed to Rosen, B. R..

13 recordsLinked to original sources

Progression of visual-stimulus-evoked blood velocity response timing across the vascular network measured with individual-vessel phase-contrast fMRA

Most functional MRI (fMRI) studies of brain function aim to measure hemodynamic responses arising from the microvasculature within the tissue parenchyma, where spatial and temporal coupling with neuronal activity is thought to be tightest. However, the measured hemodynamic responses emerge from an interconnected vascular network that includes upstream feeding arteries, downstream draining veins, and the intervening microvascular compartments. Directly measuring and comparing vascular responses across multiple stages of this network may therefore provide more specific information about network-level hemodynamics--and how hemodynamics in one stage of the vascular hierarchy influence hemodynamics in others--that is not accessible from conventional fMRI signals alone. This can provide new insights into the relationship between the observed fMRI responses and the underlying neuronal activity of interest. This study extends our recently proposed dynamic phase-contrast functional MR angiography (PC-fMRA) method for tracking stimulus-evoked blood-velocity responses in large supplying arteries to enable concurrent hemodynamic measurements across multiple levels of the neurovascular complex. Here, we apply this method across several levels of the vascular hierarchy, from the basilar and posterior cerebral arteries to pial arteries, pial veins, and major draining venous sinuses such as the straight and superior sagittal sinuses. Stimulus-locked velocity increases were observed in individual vessels within each subject. Arterial responses occurred rapidly and nearly simultaneously across upstream and pial arterial segments, whereas venous responses exhibited temporal delays relative to the arterial responses. The average arterial-to-venous response time delay differed between the onset and offset phases, measuring approximately 4.1 s during response onset and 1.3 s during response offset, and also varied across different vessel segments. A simplified Windkessel model--used to interpret these findings--predicted similar inflow-outflow delays, suggesting that these temporal differences may reflect the transient filling and draining dynamics within compliant vascular compartments intervening between supplying arteries and draining veins. Our results demonstrate the feasibility of using dynamic PC-fMRA to measure vessel-specific hemodynamic responses across the human neurovascular complex. By providing quantitative measurements of macrovascular responses that serve as inputs to and outputs from intervening vascular compartments, this approach offers a framework for probing the hemodynamics within these compartments and studying vascular network behavior during neuronal activation, which may also help improve the physiological interpretation of fMRI signals in humans.

neuroscience↗

Neural activity drives directional subarachnoid cerebrospinal fluid flow in the human brain

Neural activity is a potential driver of cerebrospinal fluid (CSF) dynamics and brain waste clearance, yet how neural activity shapes localized CSF flow in the subarachnoid space remains poorly understood in humans. Here we introduce an MRI framework that enables concurrent mapping of ultra-slow subarachnoid CSF flow at velocity scales of tens of micrometers-per-second together with hemodynamic activity measured by simultaneous functional MRI in the human brain. Using this framework, we found that neural activity drives spatiotemporally coherent, directional CSF flow in the subarachnoid space near sites of neural activation in awake humans. These flow responses were highly spatially specific, shaped by local cortical and subarachnoid anatomy, while exhibiting oscillatory temporal dynamics modulated by the stimulus cycle and strongly coupled to hemodynamic responses. These findings establish a link between neural activity, vascular dynamics, and localized subarachnoid CSF flow, and provide a framework for investigating neural-activity-driven CSF transport in humans.

neuroscience↗

Energetic implications of fMRI-based nodal complex network metrics: a complex picture unfolds across diverse brain states

Functional MRI-based graph theory has provided profound insights into the brains functional organization, yet the neuroenergetic meaning of widely used graph-theoretical metrics remains poorly understood. Although resting-state research suggests a positive coupling between network topology and glucose metabolism, it remains unclear whether this relationship reflects a general principle of brain organization or a state-specific phenomenon. Here, we test the neuroenergetic interpretability of nodal graph-theoretical metrics by linking complex network topology to cerebral glucose consumption across diverse brain states. Leveraging simultaneous functional PET-MRI, we directly compare state-dependent fluctuations in glucose consumption and network topology during sensory, cognitive, and arousal conditions. We further assess metabolic-topological couplings in disease through a meta-analysis of resting-state FDG-PET and fMRI studies involving Alzheimers disease, Parkinsons disease, major depressive disorder, and schizophrenia. Our results show that nodal graph-theoretical metrics exhibit state- and network-dependent metabolic associations, with coupling patterns diverging across experimental and disease contexts. Notably, frontoparietal and attentional networks show more conserved metabolic-topological coupling than other large-scale networks across states. These findings underscore a dynamic, complex interplay between metabolic demand and complex network organization, highlighting the need for a nuanced interpretation of the energetic underpinnings of nodal graph-theoretical metrics in health and disease.

neuroscience↗

Quantifying brain-wide cerebrospinal fluid flow dynamics using slow-flow-sensitized phase-contrast MRI

Cerebrospinal fluid (CSF) flow is a key component of the brains waste clearance system. However, our understanding of CSF flow in the human brain, particularly within the brain-wide subarachnoid space (SAS), is limited due to a lack of non-invasive tools for measuring slow flow. Here, we propose a CSF flowmetry technique using phase-contrast MRI combined with a slow-flow-sensitized acquisition. It achieves high sensitivity in measuring slow CSF flow (e.g., 100 m/s), and enables quantitative measurement of the velocity and direction with whole-brain coverage, spanning from ventricles to SAS. Our proof-of-concept results demonstrate repeatable flow measurements and show that cardiac pulsation induces coherent CSF flow changes within the SAS. Our data also suggest that cardiac pulsation has a stronger driving effect on brain-wide CSF flow compared to respiration. This technique provides a valuable tool for investigating CSF dynamics and pathways to advance a holistic understanding of brain-wide CSF flow. TeaserA novel MR technique enables noninvasive, quantitative mapping of slow cerebrospinal fluid flow in the subarachnoid space across the human brain.

bioengineering↗

Simultaneous EEG-PET-MRI identifies temporally coupled, spatially structured hemodynamic and metabolic dynamics across wakefulness and NREM sleep

Sleep entails significant changes in cerebral hemodynamics and metabolism. Yet, the way these processes evolve throughout wakefulness and sleep and their spatiotemporal dependence remain largely unknown. Here, by integrating a novel functional PET technique with simultaneous EEG-fMRI, we reveal a tightly coupled temporal progression of global hemodynamics and metabolism during the descent into NREM sleep, with large hemodynamic fluctuations emerging as global glucose metabolism declines, both of which track EEG arousal dynamics. Furthermore, we identify two distinct network patterns that emerge during NREM sleep: an oscillating, high-metabolism sensorimotor network remains active and dynamic, whereas hemodynamic and metabolic activity in the default-mode network is suppressed. These results elucidate how sleep diminishes awareness while preserving sensory responses, and uncover a complex, alternating balance of neuronal, hemodynamic, and metabolic dynamics in the sleeping brain. This work also demonstrates the potential of EEG-PET-MRI to explore neuro-hemo-metabolic dynamics underlying cognition and arousal in humans.

neuroscience↗

Differentiating BOLD and non-BOLD signals in fMRI time series using cross-cortical depth delay patterns

Over the past two decades, rapid advancements in magnetic resonance technology have significantly enhanced the imaging resolution of functional Magnetic Resonance Imaging (fMRI), far surpassing its initial capabilities. Beyond mapping brain functional architecture at unprecedented scales, high-spatial-resolution acquisitions have also inspired and enabled several novel analytical strategies that can potentially improve the sensitivity and neuronal specificity of fMRI. With small voxels, one can sample from different levels of the vascular hierarchy within the cerebral cortex and resolve the temporal progression of hemodynamic changes from parenchymal to pial vessels. We propose that this characteristic pattern of temporal progression across cortical depths can aid in distinguishing neurogenic blood-oxygenation-level-dependent (BOLD) signals from typical nuisance factors arising from non-BOLD origins, such as head motion and pulsatility. In this study, we examine the feasibility of applying cross-cortical depth temporal lag (CortiLag) patterns to automatically categorize BOLD and non-BOLD signal components in modern-resolution BOLD-fMRI data. We construct an independent component analysis (ICA)-based framework for fMRI de-noising, analogous to previously proposed multi-echo (ME) ICA, except that here we explore the across-depth instead of across-echo dependence to distinguish BOLD and non-BOLD components. The efficacy of this framework is demonstrated using visual task data at three graded spatiotemporal resolutions (voxel sizes = 1.1, 1.5, and 2.0 mm isotropic at temporal intervals = 1700, 1120, and 928 ms). The proposed CortiLag-ICA framework leverages prior knowledge of the spatiotemporal properties of BOLD-fMRI and serves as an alternative to ME-ICA for cleaning moderate- and high-spatial-resolution fMRI data when multi-echo acquisitions are not available.

neuroscience↗

Structural and functional vascular dysfunction within brain metastases is linked to pembrolizumab inefficacy

Structurally and functionally aberrant vasculature is a hallmark of tumor angiogenesis and treatment resistance. Given the synergistic link between aberrant tumor vasculature and immunosuppression, we analyzed perfusion MRI for 44 patients with brain metastases (BM) undergoing treatment with pembrolizumab. To date, vascular-immune communication, or the relationship between immune checkpoint inhibitor (ICI) efficacy and vascular architecture, has not been well-characterized in human imaging studies. We found that ICI-responsive BM possessed a structurally balanced vascular makeup, which was linked to improved vascular efficiency and an immune-stimulatory microenvironment. In contrast, ICI-resistant BM were characterized by a lack of immune cell infiltration and a highly aberrant vasculature dominated by large-caliber vessels. Peri-tumor region analysis revealed early functional changes predictive of ICI resistance before radiographic evidence on conventional MRI. This study was one of the largest functional imaging studies for BM and establishes a foundation for functional studies that illuminate the mechanisms linking patterns of vascular architecture with immunosuppression, as targeting these aspects of cancer biology may serve as the basis for future combination treatments.

cancer biology↗

The Australasian dingo archetype: De novo chromosome-length genome assembly, DNA methylome, and cranial morphology

BackgroundOne difficulty in testing the hypothesis that the Australasian dingo is a functional intermediate between wild wolves and domesticated breed dogs is that there is no reference specimen. Here we link a high-quality de novo long read chromosomal assembly with epigenetic footprints and morphology to describe the Alpine dingo female named Cooinda. It was critical to establish an Alpine dingo reference because this ecotype occurs throughout coastal eastern Australia where the first drawings and descriptions were completed. FindingsWe generated a high-quality chromosome-level reference genome assembly (Canfam_ADS) using a combination of Pacific Bioscience, Oxford Nanopore, 10X Genomics, Bionano, and Hi-C technologies. Compared to the previously published Desert dingo assembly, there are large structural rearrangements on Chromosomes 11, 16, 25 and 26. Phylogenetic analyses of chromosomal data from Cooinda the Alpine dingo and nine previously published de novo canine assemblies show dingoes are monophyletic and basal to domestic dogs. Network analyses show that the mtDNA genome clusters within the southeastern lineage, as expected for an Alpine dingo. Comparison of regulatory regions identified two differentially methylated regions within glucagon receptor GCGR and histone deacetylase HDAC4 genes that are unmethylated in the Alpine dingo genome but hypermethylated in the Desert dingo. Morphological data, comprising geometric morphometric assessment of cranial morphology place dingo Cooinda within population-level variation for Alpine dingoes. Magnetic resonance imaging of brain tissue show she had a larger cranial capacity than a similar-sized domestic dog. ConclusionsThese combined data support the hypothesis that the dingo Cooinda fits the spectrum of genetic and morphological characteristics typical of the Alpine ecotype. We propose that she be considered the archetype specimen for future research investigating the evolutionary history, morphology, physiology, and ecology of dingoes. The female has been taxidermically prepared and is now at the Australian Museum, Sydney.

genomics↗

Differential D1 and D2 receptor internalization and recycling induced by amphetamine in vivo

The dopamine system plays a significant role in drug reward and the pathogenesis of addiction. Psychostimulant drugs acutely increase dopamine levels, triggering receptor internalization. In vitro data suggest that dopamine D1 receptors (D1R) recycle, whereas D2 receptors (D2R) degrade in response to activation. Yet, receptor fates in vivo remain unclear. This study bridges in vitro mechanisms and in vivo measurements of stimulant-induced modulation of receptor states using longitudinal multi-modal imaging combined with neuropharmacology. We demonstrate how repeated amphetamine administration differentially modulates D1R vs. D2R signaling in nonhuman primates over 24 hours using simultaneous positron emission tomography and functional magnetic resonance imaging. In contrast to predominantly inhibitory D2R signaling due to an initial amphetamine challenge, excitatory D1R functional signaling prevails three hours later, while D2Rs stay internalized. These results demonstrate differential externalization mechanisms of the D1R and D2R in vivo and a shift in receptor subtype activation after a dopamine surge.

neuroscience↗

Cerebrovascular responses to O2-CO2 exchange ratio under brief breath-hold challenge in patients with chronic mild traumatic brain injury

Breath-by-breath O2-CO2 exchange ratio (bER) is a respiratory gas exchange (RGE) metric, which is the ratio of the changes in the partial pressure of O2 ({Delta}PO2) to CO2 ({Delta}PCO2) between endinspiration and end-expiration, has been demonstrated to characterize the cerebrovascular responses to breath-hold challenge in healthy individuals. We aimed to explore if bER could characterize cerebrovascular responses in patients with chronic mild traumatic brain injury (mTBI) under breath-hold challenge. We also investigated the correlation between bER and the severity of post-concussion symptoms. Blood-oxygenation-level-dependent (BOLD) images were acquired using functional magnetic resonance imaging (fMRI) on eleven patients with chronic mTBI and eleven controls without brain injury history when performing a breath-hold task. Time series of RGE metrics of {Delta}PO2, {Delta}PCO2, and bER were computed, and their cross-correlation with regional change in BOLD ({Delta}BOLD) was calculated. Symptom burden was assessed using the Rivermead Post Concussion Questionnaire (RPQ), and its correlation with RGE changes was also measured. Compared with controls, a diffuse decrease in the correlation between regional {Delta}BOLD and bER was found in the brain of mTBI patients (pfdr<0.05). No significant difference was found between patients and controls for the correlation of regional {Delta}BOLD with {Delta}PO2 and {Delta}PCO2. The averaged changes in bER ({rho}=0.79, p=0.01) and {Delta}PO2 ({rho}=0.70, p=0.03) in breath-hold epochs decreased with increased symptom severity indicated by RPQ scores. Our imaging and symptom severity findings suggest that bER can be used to characterize cerebrovascular responses to breath-hold in mTBI patients. RGE may contribute to the post-concussive symptom severity.

neuroscience↗

Functional magnetic resonance imaging of regional impaired cerebrovascular reactivity for migraineurs in the interictal state

There is still an unmet need of mapping the potential impairment of cerebrovascular reactivity (CVR) in episodic migraineurs in the interictal state. We mapped CVR of 6 episodic migraineurs and 5 headache-free controls (HC) with blood oxygenation level dependent (BOLD) functional magnetic resonance imaging (fMRI) under carbon dioxide (CO2) challenge of 30-second epochs with elevated end-tidal partial pressure of CO2 (PETCO2) by 4-8mmHg. Three migraineurs have migraine without aura (MOA) and the other three have migraine with aura (MA). We found that only MOA subjects showed a reduced or negative BOLD response to CO2 at the red nucleus. All 3 MOA subjects were characterized by bilateral posterior communicating artery hypoplasia (bPCAH) identified by MR angiography (MRA). MOA and HC subjects did not show any significant difference in BOLD responses to CO2 challenge in cortical and white matter while MA subjects showed poor positive association between BOLD responses and PETCO2 in large territories of the cortex and white matter tracts. The combined use of fMRI under CO2 challenge and MRA presented a unique approach to investigate the mechanisms of episodic migraine in the interictal state demonstrating for the first time negative CVR at the red nucleus of the midbrain in patients with MOA. CVR maps obtained from both the midbrain and cortical regions provided various signatures to explore the differences between migraineurs and HC and between MOA and MA.

neuroscience↗

Cerebrovascular reactivity assessment with O2-CO2 exchange ratio under brief breath hold challenge

Hypercapnia during breath holding is believed to be the dominant driver behind the modulation of cerebral blood flow (CBF). Here we showed that the cerebrovascular responses to brief breath hold epochs were coupled not only with increased partial pressure of carbon dioxide (PCO2), but also with a decrease in partial pressure of oxygen (PO2). We used transcranial Doppler ultrasound to evaluate the CBF changes during breath holding by measuring the cerebral blood flow velocity (CBFv) in the middle cerebral arteries, a pair of cerebral arteries that supply most parts of the brain. The regional CBF changes during breath hold epochs were mapped with blood oxygenation level dependent (BOLD) signal changes as surrogate of CBF changes using functional magnetic resonance imaging (fMRI) technique. Given the interdependence of the dynamic changes between PCO2 and PO2, we found that the breath-by-breath O2-CO2 exchange ratio (bER), namely the ratio of changes in PO2 ({Delta}PO2) to changes in PCO2 ({Delta}PCO2) between end inspiration and end expiration, was superior to either {Delta}PO2 or {Delta}PCO2 alone in coupling with the changes of CBFv and BOLD signals under breath hold challenge. The regional cerebrovascular reactivity (CVR) results derived by regressing BOLD signal changes on bER under breath hold challenge resembled those derived by regressing BOLD signal changes on end-tidal partial pressure of CO2 (PETCO2) under exogenous CO2 challenge. Our findings provide a novel insight on the potential of using bER to better quantify CVR changes under breath hold challenge, although the physiological mechanisms of cerebrovascular changes underlying breath hold and exogenous CO2 challenges are potentially different.

neuroscience↗

Dynamic Brain-Body Coupling of Breath-by-Breath O2-CO2 Exchange Ratio with Resting State Cerebral Hemodynamic Fluctuations

The origin of low frequency cerebral hemodynamic fluctuations (CHF) in resting state remains unknown. Here we studied the contribution of respiratory gas exchange (RGE) metrics to CHF during spontaneous breathing. RGE metrics include the breath-by-breath changes of partial pressure of oxygen ({Delta}PO2) and carbon dioxide ({Delta}PCO2) between end inspiration and end expiration, and their ratio breath-by-breath O2-CO2 exchange ratio (bER). We used transcranial Doppler sonography to evaluate CHF changes during spontaneous breathing by measuring the cerebral blood flow velocity (CBFv) in the middle cerebral arteries. The regional CHF changes during spontaneous breathing were mapped with blood oxygenation level dependent (BOLD) signal changes using functional magnetic resonance imaging (fMRI) technique. We found that prominent oscillations with periods of 0.5 to 2 minutes characterized {Delta}PO2, {Delta}PCO2 and bER. The oscillations of bER were coherent with CHF during spontaneous breathing at the frequency range of 0.008-0.03Hz which is consistent with the low frequency resting state CHF. CHF had strong correlation with bER, followed by {Delta}PO2 and then by {Delta}PCO2. Brain regions with the strongest bER-CHF coupling overlapped with many areas of default mode network. Although the physiological mechanisms underlying the strong correlation between bER and CHF are not completely understood, our findings suggest the contribution of bER to low frequency resting state CHF. It also provides a novel insight of brain-body interaction via CHF and oscillations of RGE metrics.

neuroscience↗